RNA id: TU2620235


Basic Information

Item Value
RNA id TU2620235
length 587
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2291192
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5416176 ~ 5416762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTCACATGTCTTCAGGGGTTAACTGGAAATTCGACGATGGAGTCACCCTGGAATCTAAAACAAGAACGTTTTCAACCAGGAGTTTCACCCAACTTCTACCAACTCTCCACAATAAGAAGGGAGGTGACCTAACTGTTCTGTTCCTACCTGTTGAGCTGAACCCTCTACCCGGGTCTACCTGATCACCTGATCTCAAGAGTACAGGTACAAACCCTAcaatcacaaacagacaaatggCACAGCAGCCAATGGGAGGAGGTTATTGTGTCCTAgtagctgcgtgtgtgtgtgtgcgtgtgtgtgtgcgtgcgtgcacgtgtgtgtgtgtgtgtgtgtgtggaaccaCACTGTGACGTCGACCTCTAGCAGGCTCAATTACAAACTCCCTCAGAACCTTCAAGCTATGGTTCAGAGATTACTGAGCAATACCCTGCTTACCACAACCACACTTACTACATGTAAATATCTCTTCATTTACTCTCTTTAATCTTGTTATTACAatgactattattattattattattattgctacaGCATTACTATGGAATATTACGATCACTGTCATTATTATCACGTGTTTGTTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620238 lncRNA upstream 3084 5412686 ~ 5413092 (+) True G2291193
TU2620249 lncRNA upstream 30120 5385365 ~ 5386056 (+) True G2291198
TU2620228 lncRNA upstream 35893 5380077 ~ 5380283 (+) True G2291186
TU2620110 lncRNA upstream 50918 5364114 ~ 5365258 (+) True G2291082
TU2620115 lncRNA upstream 51074 5363320 ~ 5365102 (+) False G2291082
TU2620242 lncRNA downstream 70 5416832 ~ 5418238 (+) False G2291194
TU2620277 lncRNA downstream 35891 5452653 ~ 5466304 (+) True G2291213
TU2620281 lncRNA downstream 44979 5461741 ~ 5462301 (+) True G2291215
TU2620285 lncRNA downstream 53701 5470463 ~ 5471514 (+) False G2291218
TU2620287 lncRNA downstream 53701 5470463 ~ 5471138 (+) False G2291218
XM_036970898.1 mRNA upstream 3551 5295809 ~ 5412625 (+) False dlgap3
XM_036971384.1 mRNA upstream 398228 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 404372 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 2234376 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2424088 2930144 ~ 2992088 (+) True angpt2b
XM_036971692.1 mRNA downstream 92239 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 92239 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 175350 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 215535 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 228421 5645183 ~ 5677904 (+) True LOC110489437
TU2620246 other upstream 8668 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 14914 5384651 ~ 5401262 (+) False dlgap3
TU2619856 other upstream 397862 5014656 ~ 5018314 (+) True smim12
TU2619393 other upstream 867332 4546904 ~ 4548844 (+) False G2290455
TU2620241 other downstream 70 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 70 5416832 ~ 5418238 (+) True G2291194
TU2620290 other downstream 54801 5471563 ~ 5472153 (+) True G2291219
TU2620425 other downstream 307562 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 307624 5724386 ~ 5738945 (+) False wipf3

Expression Profile