RNA id: TU2620281


Basic Information

Item Value
RNA id TU2620281
length 541
lncRNA type intronic
GC content 0.43
exon number 2
gene id G2291215
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5461741 ~ 5462301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtattgtattgcctcttaccagactgtattgtattgcctcctaccagactgtattgtattgtctcctaccagactgtattgtattgcctcctaccagactgtattgtattgcctcctaccagactgtattgtattgcctcctaccagactgtattgtattgcctcctaccagactgtattgtattgcctcctaccagactgtattgtattgtctcctaccagactgtattgtattgcctcctaccagactgtattgtattgtctcctaccagactgtattgtattgcctcctaccagactgtattgtattgcctcctaccagactgtattgtattgcctcctaccagactgtattgtattgcctcctaccagactgtattgtattgCCTCCTACCAGACTGTATTGTATCGTCTCCTACCAGACTGTATTGTATCGTCTCCTACCAGACTGTATTGTATTGTATCGTCTCCTaccagactgtattgtattgCCTCCTACCAGACTGTATTGTTTTGCCTCCTaccagactgtattgtattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620242 lncRNA upstream 43503 5416832 ~ 5418238 (+) False G2291194
TU2620235 lncRNA upstream 44979 5416176 ~ 5416762 (+) True G2291192
TU2620238 lncRNA upstream 48649 5412686 ~ 5413092 (+) True G2291193
TU2620249 lncRNA upstream 75685 5385365 ~ 5386056 (+) True G2291198
TU2620228 lncRNA upstream 81458 5380077 ~ 5380283 (+) True G2291186
TU2620285 lncRNA downstream 8162 5470463 ~ 5471514 (+) False G2291218
TU2620287 lncRNA downstream 8162 5470463 ~ 5471138 (+) False G2291218
TU2620288 lncRNA downstream 8162 5470463 ~ 5471196 (+) True G2291218
TU2620267 lncRNA downstream 73056 5535357 ~ 5535923 (+) False G2291206
TU2620266 lncRNA downstream 73110 5535411 ~ 5535923 (+) True G2291206
XM_036970898.1 mRNA upstream 49116 5295809 ~ 5412625 (+) False dlgap3
XM_036971384.1 mRNA upstream 443793 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 449937 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 2279941 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2469653 2930144 ~ 2992088 (+) True angpt2b
XM_036971692.1 mRNA downstream 46700 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 46700 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 129811 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 169996 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 182882 5645183 ~ 5677904 (+) True LOC110489437
TU2620241 other upstream 43503 5416832 ~ 5418238 (+) False G2291194
TU2620244 other upstream 43503 5416832 ~ 5418238 (+) True G2291194
TU2620246 other upstream 54233 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 60479 5384651 ~ 5401262 (+) False dlgap3
TU2619856 other upstream 443427 5014656 ~ 5018314 (+) True smim12
TU2620290 other downstream 9262 5471563 ~ 5472153 (+) True G2291219
TU2620425 other downstream 262023 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 262085 5724386 ~ 5738945 (+) False wipf3
TU2620437 other downstream 277121 5739422 ~ 5749458 (+) True wipf3
TU2620681 other downstream 685523 6147824 ~ 6148246 (+) True G2291490

Expression Profile