RNA id: TU2620321


Basic Information

Item Value
RNA id TU2620321
length 1105
lncRNA type antisense_over
GC content 0.47
exon number 6
gene id G2291247
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5538783 ~ 5544500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTTCGGTATGATTTTAATTCATTCTACACCAGCTATGTGGGTCTGTACACAAAATACAGACATGATATGGAGGACAGACCAGTATTATAAAGTTAATGTTCGTAAAAACACACGTTGTGATTCACCTTTCAGTTAAAGTGTATTTAGAAACAAAATACAGACATTATACAGAAAAATCATGTTACAAAAAAACCCAGAAAGgcaaaaataataattgtgttcACTTGGTAGAAAACTACTTGACTTGATACTCATCTGAGGAAACCCACATTTAAAGCTTGTGTTTCCCGCGGTTACAATAGTGATACAGGAAGGAAGTGCCTATTAGACATCCTTCAGATAAATGTGTTGTGTGTTCCTGTGAGTCTCAGAACTCCTTGAGAGTGTCCCCTCCCTGAGGGTTTTCCAGCCAGTGTGGGGGCCAGGTAGCTTTAACACTGGGTCTGTCCTTCACCATATTGTAGTACGCTCCCAGTTTGGGGTAACGCGCCGTAGACAGCCCAAAGCGGAAGGCGTAGGCAATCACAGGGAAGACAATAACGTCAGCCAATGAGAAGGCTTTTCCTGCCAGGTAAGAACCCACCTCCGCcTTCTGAAAGTATCCCTCCCACAGTTTGATTTCAGCGGCCAGGTTCTCCTTGTTCCTCTTGATAGCggagtcatgtctctctccctcgggGACACGGTAGTTGTAGTAGATGACGTTACtgaGTTTGTCACTGAAGTTGAGGACCTCAAACATGCGCTGGTACATCAGGGCCTGCTCTAGTTGACCCTCAGGAATCAACTGGGGTCCCTGGGACCTGAACCGGCTCTCCAGGTACATGCATGCTGCATATGACTCGTTGAGTATGTTGTCTCCGTGTTTGAAAGCAGGGAGCTGTCCTCTGGGATTGATGTCCAGGACTTCTTTAGACTTGTGCTCTGCTTTCTCGAAGGACAGAAGTTTCTGATTGTATCCCTGCAGTTGCTTTTCCTCCAGAGCGATCATGACACGCCAGCACGGAGGAGAGCCGGAGCCCCAGAGAAGTGTCATGTCCTTGGCCATGATTGGAGACTCGACCGCAAAAGTAGAAATCGTTTTGTATGAGTGGCGAAAGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620267 lncRNA upstream 2860 5535357 ~ 5535923 (+) False G2291206
TU2620266 lncRNA upstream 2860 5535411 ~ 5535923 (+) True G2291206
TU2620285 lncRNA upstream 67269 5470463 ~ 5471514 (+) False G2291218
TU2620288 lncRNA upstream 67587 5470463 ~ 5471196 (+) True G2291218
TU2620287 lncRNA upstream 67645 5470463 ~ 5471138 (+) False G2291218
TU2620333 lncRNA downstream 1480 5545980 ~ 5546898 (+) True G2291250
TU2620335 lncRNA downstream 6677 5551177 ~ 5551427 (+) True G2291252
TU2620342 lncRNA downstream 12467 5556967 ~ 5557302 (+) True G2291258
TU2620347 lncRNA downstream 18830 5563330 ~ 5563603 (+) True G2291263
TU2620349 lncRNA downstream 22474 5566974 ~ 5567294 (+) True G2291265
XM_036971692.1 mRNA upstream 13714 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA upstream 13714 5509001 ~ 5525069 (+) True LOC110513117
XM_036970898.1 mRNA upstream 126158 5295809 ~ 5412625 (+) False dlgap3
XM_036971384.1 mRNA upstream 520835 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 526979 5002978 ~ 5011804 (+) True pef1
XM_036971451.1 mRNA downstream 47612 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 87797 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 100683 5645183 ~ 5677904 (+) True LOC110489437
XM_036971730.1 mRNA downstream 179770 5724270 ~ 5749736 (+) False wipf3
XM_036971826.1 mRNA downstream 274580 5819080 ~ 5856740 (+) True LOC110489352
TU2620290 other upstream 66630 5471563 ~ 5472153 (+) True G2291219
TU2620241 other upstream 120545 5416832 ~ 5418238 (+) False G2291194
TU2620244 other upstream 120545 5416832 ~ 5418238 (+) True G2291194
TU2620246 other upstream 131275 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 137521 5384651 ~ 5401262 (+) False dlgap3
TU2620425 other downstream 179824 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 179886 5724386 ~ 5738945 (+) False wipf3
TU2620437 other downstream 194922 5739422 ~ 5749458 (+) True wipf3
TU2620681 other downstream 603324 6147824 ~ 6148246 (+) True G2291490
TU2620690 other downstream 616578 6161078 ~ 6161719 (+) True G2291498

Expression Profile