RNA id: TU2620371


Basic Information

Item Value
RNA id TU2620371
length 252
lncRNA type inter_gene
GC content 0.63
exon number 2
gene id G2291286
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5628628 ~ 5629225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaggaggaggcaggtagctgggtccaggggcaggcagaaggtcatacacaggaggaggcaggtagctgggtccaggggcaggcagaagggcatacacaggaggaggcaggtagctgggtccaggggcaggcagaaggtcatacacaggaggaggcaggtagctgggtccgtGGGCAGGCAGAAGggcatacacaggaggaggcaggtagctgggtccaggggcagccagaaggtcatacacagggggtcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620350 lncRNA upstream 60965 5567298 ~ 5567663 (+) True G2291266
TU2620349 lncRNA upstream 61334 5566974 ~ 5567294 (+) True G2291265
TU2620347 lncRNA upstream 65025 5563330 ~ 5563603 (+) True G2291263
TU2620342 lncRNA upstream 71326 5556967 ~ 5557302 (+) True G2291258
TU2620335 lncRNA upstream 77201 5551177 ~ 5551427 (+) True G2291252
TU2620403 lncRNA downstream 68295 5697520 ~ 5697778 (+) True G2291311
TU2620406 lncRNA downstream 69711 5698936 ~ 5699555 (+) False G2291312
TU2620405 lncRNA downstream 69964 5699189 ~ 5699674 (+) False G2291312
TU2620404 lncRNA downstream 70023 5699248 ~ 5699674 (+) False G2291312
TU2620407 lncRNA downstream 70023 5699248 ~ 5699555 (+) True G2291312
XM_036971451.1 mRNA upstream 13255 5592112 ~ 5615373 (+) True LOC110489357
XM_036971692.1 mRNA upstream 103559 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA upstream 103559 5509001 ~ 5525069 (+) True LOC110513117
XM_036970898.1 mRNA upstream 216003 5295809 ~ 5412625 (+) False dlgap3
XM_036971384.1 mRNA upstream 610680 5014549 ~ 5017948 (+) False smim12
XM_021562074.2 mRNA downstream 3072 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 15958 5645183 ~ 5677904 (+) True LOC110489437
XM_036971730.1 mRNA downstream 95045 5724270 ~ 5749736 (+) False wipf3
XM_036971826.1 mRNA downstream 189855 5819080 ~ 5856740 (+) True LOC110489352
XR_005041384.1 mRNA downstream 417365 6046590 ~ 6047475 (+) True LOC110520219
TU2620290 other upstream 156475 5471563 ~ 5472153 (+) True G2291219
TU2620241 other upstream 210390 5416832 ~ 5418238 (+) False G2291194
TU2620244 other upstream 210390 5416832 ~ 5418238 (+) True G2291194
TU2620246 other upstream 221120 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 227366 5384651 ~ 5401262 (+) False dlgap3
TU2620425 other downstream 95099 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 95161 5724386 ~ 5738945 (+) False wipf3
TU2620437 other downstream 110197 5739422 ~ 5749458 (+) True wipf3
TU2620681 other downstream 518599 6147824 ~ 6148246 (+) True G2291490
TU2620690 other downstream 531853 6161078 ~ 6161719 (+) True G2291498

Expression Profile