RNA id: TU2620407


Basic Information

Item Value
RNA id TU2620407
length 308
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2291312
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5698936 ~ 5699674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGAGACACACGAGGTGAAAGCAAACAAAAACAGACCATCGTTTGGTTCAAAGCAAAAATACCACCAACCATAATTAAAACACACTTATTTAAATGTTAAAATAGCAAGGTAGTAGCCTATTTTAGTCCCTGGTACAGTCAGACCACCAGTAGTCTGACTATCATCTGTTTTACATTCTGCTCCACCCTTTCATTTTAAAAGGAAACCTTTCAACCAAATGACATGGCACTGTTACCAGGAACACCATCTTGGTTGAAACTTGACATCATTCAGAATCCATTTGATAGATTGTTttttcttctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620403 lncRNA upstream 1470 5697520 ~ 5697778 (+) True G2291311
TU2620371 lncRNA upstream 70023 5628628 ~ 5629225 (+) False G2291286
TU2620372 lncRNA upstream 70023 5628628 ~ 5629225 (+) True G2291286
TU2620350 lncRNA upstream 131585 5567298 ~ 5567663 (+) True G2291266
TU2620349 lncRNA upstream 131954 5566974 ~ 5567294 (+) True G2291265
TU2620410 lncRNA downstream 458 5700013 ~ 5700617 (+) True G2291313
TU2620419 lncRNA downstream 20252 5719807 ~ 5720039 (+) True G2291321
TU2620455 lncRNA downstream 74295 5773850 ~ 5779668 (+) True G2291338
TU2620458 lncRNA downstream 84610 5784165 ~ 5784756 (+) True G2291341
TU2620513 lncRNA downstream 168047 5867602 ~ 5872088 (+) False G2291359
XM_036971729.1 mRNA upstream 21344 5645183 ~ 5677904 (+) True LOC110489437
XM_021562074.2 mRNA upstream 57701 5632297 ~ 5641547 (+) True slc6a18
XM_036971451.1 mRNA upstream 83875 5592112 ~ 5615373 (+) True LOC110489357
XM_036971692.1 mRNA upstream 174179 5509001 ~ 5525069 (+) False LOC110513117
XM_036971730.1 mRNA downstream 24715 5724270 ~ 5749736 (+) False wipf3
XM_036971826.1 mRNA downstream 119525 5819080 ~ 5856740 (+) True LOC110489352
XR_005041384.1 mRNA downstream 347035 6046590 ~ 6047475 (+) True LOC110520219
XM_036971319.1 mRNA downstream 410824 6110379 ~ 6203899 (+) False LOC110487836
XM_036971321.1 mRNA downstream 441117 6140672 ~ 6203899 (+) False LOC110487836
TU2620290 other upstream 227095 5471563 ~ 5472153 (+) True G2291219
TU2620241 other upstream 281010 5416832 ~ 5418238 (+) False G2291194
TU2620244 other upstream 281010 5416832 ~ 5418238 (+) True G2291194
TU2620246 other upstream 291740 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 297986 5384651 ~ 5401262 (+) False dlgap3
TU2620425 other downstream 24769 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 24831 5724386 ~ 5738945 (+) False wipf3
TU2620437 other downstream 39867 5739422 ~ 5749458 (+) True wipf3
TU2620681 other downstream 448269 6147824 ~ 6148246 (+) True G2291490
TU2620690 other downstream 461523 6161078 ~ 6161719 (+) True G2291498

Expression Profile