RNA id: TU2620475


Basic Information

Item Value
RNA id TU2620475
length 2130
lncRNA type antisense_over
GC content 0.35
exon number 3
gene id G2291358
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5873826 ~ 5876241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGATTCGAATCCAACTTTATTAGATGTCAAAGGGCATGCAAATACAGGCTTCTGAACCCCAAAAATGTGGTAGATATTTTTTCTTGTTTTCCATCAGTTTggtactctttttttttttttttttacaaaactaCGTGCACCTTAATAAGTACTCAATTCTGCAACGTACAAACCACAAAAATACCAGTTTTACATGATCAAATACTGCACATAGAAAACATTTACATAGCATCAGGTATAAAATTACATTATGCTTCAAAATCTACAACACTTTCCTCTTTTCAAACTCACTATTTGAATGATGGGCCAGACCAGTGAGTAAAAACTGTTTATTACCAACACCAGCCTTAGACCCCAATATCCATTTTGTCCAATCAGGTGATCCATCGATGAGCCTTTACGTCCACGCTATTGGCCAAAGCCTCGACGAttaatcattgtgtgtgtgaatACGTGTTAAATCTAAATATCCAATAGATTATCAAAAACATTAAAGTTGCTGTGACATTTTTCCAACATTTCTGTAATGTTACTGTGTTACATTGCTGCATGTTTGAGAGGAGGGGTGTTCCCTGGCTAGGGATGACCATATGAAGGTCATCTTTAAAGGGGGAAGCTACTGTGGTCTACAACATGGCTTTGGGAGATTCTCATTTGTGTTTTGTGACAGACTGTCAGAAGTTGACAGACAAAATAGTTGCTCAGGAACTTGTGTTGTGACTAATGGCGATTAGAAACGTGACTTAATGTTGACGAACAGCATTttacagcagcagtagtaaaaTTTGCTCTGTGGAGTAAAAAAACGATATTAAACAATATTCTTATCCTTGCTAAAGGTTGCTAAAAGGTTGACAAGCAGATGTAAAGACCGCACACTTTCTTGAATatttagtttgtttgtttgttggtcaAGGAAAACTTTGGGTTCATcgtaaaatgttatttttgttgttCTCAGTGCATTGAGTGCTTTGTGAGTCAATGGTGCTAAGCTCTGAAAACTGTTTGTCATTTTGAAATGATCCTGCTGAACTAGATGATATCAACGTTTGAATTACACACGGACTAGCGGTACCCTCCGAATAGTGGACTAGTCCAACGTTTGAATTACACACTGACTAGCGGTACCCTCCAAATAGTGGACTAGTCCAACGTTTGAATTACACACTGACTAGCGGTACCCTCCAAATAGTGGACTAGTCCAGTGTTTATTTCTTCAACATTATGGTGGTGACAACGTTAACATTTTCAACATTTATGGGGTTTTTCTGATTTGTGAAAGGAGAGCACAGCATTCCTGGGAACTCCCCCTGCCGTTCAAACTGTACCATGTCCACATGGTGTAGTGGAAACCAGTCAGAGGTACTGTATCTAGGGGACTTAAGGCTGGCCCTACTAGTCACGGCCTAACTGACATAACATAAGTCCTCTGACACAAGAACATACATTAGTATTGCCAGAAGAATAACTCTGTATCAGCAGAATGGAAGGCTAAATTCATGCTACATTAGATACAATTGTTCACATTTCTTGCAATTTACAGATTTCCCATGACACGTTGCTGAGTATATTTCTAAATTGATTatatcgtcatcatcatcaacatatTGTAAATACAAGAAATCCTTCAAAATAACCATGCAGTAAAATATTTTAAGGTTTTTCTAAAGTACAAACGTGTATTAAATTACAGTTATAAACTCCATAAATAAATCGGTTAATTCAGTTTCATTAATAAATCTGTTAATTCAGCTTCATTAATAAATCAGTTAATTCAGTTTCATTAATAAATCAGTTAATTCAGCTTCATTAATAAATCCGTTCATTCAGCTTCATTAATAAATCCGTTAATTTAGCTTCATTAATAAATCAGTTAATTCAGCTTCATTAATAAATCCGTTAATTCAGCTTCATTAATAAATTGGTTGATTCAGCTTAATTAATACATCGGTTAATTCAAATTCAGCTTAATTAATAAAATCTGTTAACTCAGCTTCATTAATAAATCAGTTAATTCAGCTTAATTAATCAAATCTGTTAACTCAGCCTCATTAATAAATCAGTTAATTCAGCTTAATTAATCAAATCTGTTAACTCAGCCTCATTAATAAATCAGTTAATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620513 lncRNA upstream 1738 5867602 ~ 5872088 (+) False G2291359
TU2620508 lncRNA upstream 1738 5870022 ~ 5872088 (+) False G2291359
TU2620512 lncRNA upstream 1738 5870022 ~ 5872088 (+) False G2291359
TU2620518 lncRNA upstream 1951 5867602 ~ 5871875 (+) False G2291359
TU2620516 lncRNA upstream 1951 5870022 ~ 5871875 (+) False G2291359
TU2620555 lncRNA downstream 25706 5901947 ~ 5909243 (+) False G2291388
TU2620556 lncRNA downstream 25706 5901947 ~ 5902498 (+) True G2291388
TU2620560 lncRNA downstream 39326 5915567 ~ 5916929 (+) True G2291392
TU2620575 lncRNA downstream 68927 5945168 ~ 5946167 (+) True G2291405
TU2620576 lncRNA downstream 69678 5945919 ~ 5947262 (+) True G2291406
XM_036971826.1 mRNA upstream 17086 5819080 ~ 5856740 (+) True LOC110489352
XM_036971730.1 mRNA upstream 124090 5724270 ~ 5749736 (+) False wipf3
XM_036971729.1 mRNA upstream 195922 5645183 ~ 5677904 (+) True LOC110489437
XM_021562074.2 mRNA upstream 232279 5632297 ~ 5641547 (+) True slc6a18
XM_036971451.1 mRNA upstream 258453 5592112 ~ 5615373 (+) True LOC110489357
XR_005041384.1 mRNA downstream 170349 6046590 ~ 6047475 (+) True LOC110520219
XM_036971319.1 mRNA downstream 234138 6110379 ~ 6203899 (+) False LOC110487836
XM_036971321.1 mRNA downstream 264431 6140672 ~ 6203899 (+) False LOC110487836
XM_036971322.1 mRNA downstream 310320 6186561 ~ 6203899 (+) False LOC110487836
XR_005041352.1 mRNA downstream 518074 6394315 ~ 6398079 (+) False LOC118946494
TU2620437 other upstream 124368 5739422 ~ 5749458 (+) True wipf3
TU2620425 other upstream 134881 5724324 ~ 5738945 (+) False wipf3
TU2620421 other upstream 134881 5724386 ~ 5738945 (+) False wipf3
TU2620290 other upstream 401673 5471563 ~ 5472153 (+) True G2291219
TU2620244 other upstream 455588 5416832 ~ 5418238 (+) True G2291194
TU2620681 other downstream 271583 6147824 ~ 6148246 (+) True G2291490
TU2620690 other downstream 284837 6161078 ~ 6161719 (+) True G2291498
TU2620737 other downstream 431895 6308136 ~ 6316697 (+) True G2291541
TU2621799 other downstream 1006136 6882377 ~ 6883166 (+) True G2292347
TU2622167 other downstream 1314011 7190252 ~ 7190850 (+) True G2292666

Expression Profile