RNA id: TU2621372


Basic Information

Item Value
RNA id TU2621372
length 598
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G2292026
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 6454986 ~ 6456879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTGCAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGTAGGTTGGTAATATGTTGATGTTGTAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGCAGGTTGGTAATATGTTGATGTTGTAGGTTGGTAATATGTTGATGTTGTAGGTTGGTCATTTTAATTTGAACTTTAGTAGTGTTGTTGGTAACTAAGACTACATGTGCACAGGCAGCAAGATTCTTATATTTTTCCGCTAATtcgtcttttgaccaatcagatcagctcttttgccaataatttgTCTAAAAATAGGAATTGAGCTTCTTGTTTAAACACATCCTAAGTAGTCTCCTGGAGTTGTTCTTTACTTATAATCAATGATTTGCTTATTATAACACTACCTGACTAAATGCATGTGGACGCCTGTTCATCgcaaatctcattccaaaatcatggtcattaatatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2621309 lncRNA upstream 56604 6394261 ~ 6398382 (+) True LOC118946494
TU2621306 lncRNA upstream 73521 6381251 ~ 6381465 (+) True G2292009
TU2621305 lncRNA upstream 74404 6380382 ~ 6380582 (+) True G2292008
TU2620789 lncRNA upstream 106310 6348339 ~ 6348676 (+) True G2291590
TU2620783 lncRNA upstream 126654 6327556 ~ 6328332 (+) True G2291584
TU2621317 lncRNA downstream 13513 6470392 ~ 6473405 (+) False G2292013
TU2621327 lncRNA downstream 13513 6470392 ~ 6473405 (+) False G2292013
TU2621331 lncRNA downstream 13513 6470392 ~ 6473405 (+) False G2292013
TU2621337 lncRNA downstream 13513 6470392 ~ 6529498 (+) False G2292013
TU2621341 lncRNA downstream 13513 6470392 ~ 6473405 (+) False G2292013
XR_005041352.1 mRNA upstream 56907 6394315 ~ 6398079 (+) False LOC118946494
XM_036971319.1 mRNA upstream 251087 6110379 ~ 6203899 (+) False LOC110487836
XM_036971321.1 mRNA upstream 251087 6140672 ~ 6203899 (+) False LOC110487836
XM_036971322.1 mRNA upstream 251087 6186561 ~ 6203899 (+) False LOC110487836
XR_005041384.1 mRNA upstream 407511 6046590 ~ 6047475 (+) True LOC110520219
XM_036971685.1 mRNA downstream 194585 6651464 ~ 6676974 (+) True LOC110487847
XM_036970956.1 mRNA downstream 346154 6803033 ~ 6867523 (+) True LOC110489360
XM_036971606.1 mRNA downstream 460110 6916989 ~ 6942356 (+) False LOC110487851
XM_036971605.1 mRNA downstream 460111 6916990 ~ 6942356 (+) False LOC110487851
XR_005041378.1 mRNA downstream 460111 6916990 ~ 6942356 (+) False LOC110487851
TU2620737 other upstream 138289 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 293267 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 306740 6147824 ~ 6148246 (+) True G2291490
TU2620437 other upstream 705528 5739422 ~ 5749458 (+) True wipf3
TU2620421 other upstream 716041 5724386 ~ 5738945 (+) False wipf3
TU2621799 other downstream 425498 6882377 ~ 6883166 (+) True G2292347
TU2622167 other downstream 733373 7190252 ~ 7190850 (+) True G2292666
TU2622774 other downstream 1389800 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 1457745 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 1618808 8075687 ~ 8078381 (+) False G2293430

Expression Profile