RNA id: TU2621737


Basic Information

Item Value
RNA id TU2621737
length 3780
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2292289
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 6858402 ~ 6862847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGTacccgaaactttgaacatcccacggagaaccattaaatccattattaaaaaaatggaaGGAATAGGGCACCAtgacaaacctgccaagagagggccgcccaccaaaactcacagaccaggcaaggagggcattcatCAGAGAGGCTACAAAGAGACCAACgttaaccctgaaggagctgcaaagctccacagcggagattggagtatctgtccataggaccactttaagccgttcactccacagagctgggctttatggaagagaggccagaaaaaaagccattgcttaaagaaaaaaataagcaaatacgtttggtgttcaccaagaGGCATGTGGAAGaagatactctggtcagatgagactcaaattaactttttggccatcaaggaaaacgctatatATGgcccaaacccaacacctcacatcacccTGAAAactccatccccacagtgaagcatggtggtggcagcatcatgctgtgggtatgtttttcatcggcagggaaactgggaaactggtcagaattgaaggaatgatggatggcgctaaatacagggaaatgcttgagggaaacctatttcagtcattcagagatttgagactgtgaTGGAGGTTCACCTACCAGCAGTacaaagcatactgctaaagcaacactcgagtggtttatggggaaacatttaaatgtcttggaatggcctaatcaaagcccagacctcaatccaattgagaatcggtggcatgatttaaagattgctgtacaccagcggaacccatccaacttgaaggagctggagcagttttgccttgaaggatgtgcaaaaatcccagtggccaAGATGTGCCAAGCCTATAGAGACATTACAGCTGtgattgctgcaaaaggtgtctctacaaagttttttttgtcttatttcttgtttgtttcacaataaaaacatattttgcatcttcaaagtgataggcatgttgtgtaagtcAAATGATACAAATGGTTGTaaaaattccaggttgtaaggcaacaaaataggaaaaatgccaagagggtgAATATTATTGACCAAATTAGTGGCGGGTggccactttgttattgttttaactGCTGATTCCAGGTACAAAAACGCCTCCTAAAGGTGCCCAGTCATTCTGAATGGGGGCTAATGAAAATGACACTACAGTGACCTGGAAATACGATTACGTTGCTAACGTAGGCAAATCATTTGTAGGAAAACAACTTTGCCatcatttttttacctttattttattttacttacTTTattttatgcaagtcaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgagctcggggatttgaactcgcaaccttccaattattagcccaacactctaaccactaggctacccctaaAGATCATTATGATGTTGTAAAATGTACTTTAGACAGTGGGCAATGTGATCATGTGGTCAAGAGCTAGCAAAGTTCATACAAAATAACTAGCAATGCTAAGGTTAGCTTGCAAAGTTCATAAcaaatagctagcaatgctaaccTTAGCTAGCAAAGTTTATAAAAtatagctagcaatgctaacgttagctagcaaagtTCATAAAAAAATTGCGAGCAATGATACATTTAGTCCTCTCAACCTTGACAAAAGGTTGTCCTATTAATTATTTGCCTCCTTCTTTGAAAATCCATCCACATTAATGCACTTTAGAAGAAGTCTTCTGTAGCTCACATTAATAATGCACCAAGAAGAATACCCAGTAGTGCATCAGTCCTAAAACGAACGTTAAAAAAACAATATTGTGACAAAACGTGCAACCCATTATTAGTTATTAGTTATGCTTTTCTGTGTTTGCCTACGGAGCAGGGGAGGGCAACTACGTAGCTGAATCAGACTTGCAACCCATTATTAGTCATTAGTTATGCTACTACGTAGCTGAATCAGGCGTGCAACCCATTATTAGTTATTAGTTATGCTACTACGTAGCTGAATCAGGCTTGTTAGTGATGGGCTGGACCAAAACACTGCATGCACTGTAGCTCTTGCAGGAAAGGTTGCATCCCAaaattgcaccatattccctatttaaggcccattagggctctggtcaaaagtagtgcactatatagggaatagggctctggtctaaagtagtgcactatacaggggatagggctctggtctaaagtagtgcactatatagggaatagggctcaggtttaaagttgtgcactatatagggagtagggctctggtttaaagttgtgcacaatatagggaatagggctctggtctaaagtagtgcactatatagggagtagggctctggtttaaagttgtgcactatatagggaatagagctctggtctaaaatagtgcactatataaggaataggcctctggtctaaagtagtgcactatatagggaatagggtgccatttgggacacacaatgCTGCTCTCAGGGGGTCTTGTGATACGCAGATAGAGGACGGATGAGATCGATACAGAAAGCTTTGCTCTCTTCAGCCTACAGCAATGACTCAAGTGGATTTCCCACTCCATGTTATCTGTCACTCCCTCTTCCCATTAAACCATCcaaccctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtgaCTCCCTCTTCCCATTAAACCATCCAATCCAATCTCTCTCTGTTGTCACTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgttgtcaCTCCCTCTTCCCATTAAACCATCCaatcctatctctctctgctcttacTCTCTCAGGACATAATCtggagatagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacagaccagatagatctactgtctctattacattatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacagaccagatagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacataccagctagatctactgtctctattatattatgacagaccagatagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattatgacagaccaactagatctactgtctctattatattatgacagaccagttagatctactgtctctactatattatgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2621792 lncRNA upstream 7578 6850394 ~ 6850824 (+) True G2292340
TU2621764 lncRNA upstream 54449 6803441 ~ 6803953 (+) True G2292315
TU2621723 lncRNA upstream 107247 6750825 ~ 6751155 (+) True G2292277
TU2621659 lncRNA upstream 167156 6691024 ~ 6691246 (+) True G2292225
TU2621441 lncRNA upstream 174517 6677453 ~ 6683885 (+) False G2292078
TU2621794 lncRNA downstream 14416 6877263 ~ 6877893 (+) True G2292342
TU2621796 lncRNA downstream 17845 6880692 ~ 6881469 (+) True G2292344
TU2621809 lncRNA downstream 78428 6941275 ~ 6943817 (+) True LOC110487851
TU2621811 lncRNA downstream 82497 6945344 ~ 6946766 (+) True G2292357
TU2621810 lncRNA downstream 84052 6946899 ~ 6947478 (+) True G2292356
XM_036971685.1 mRNA upstream 181428 6651464 ~ 6676974 (+) True LOC110487847
XR_005041352.1 mRNA upstream 460323 6394315 ~ 6398079 (+) False LOC118946494
XM_036971319.1 mRNA upstream 654503 6110379 ~ 6203899 (+) False LOC110487836
XM_036971606.1 mRNA downstream 54142 6916989 ~ 6942356 (+) False LOC110487851
XM_036971605.1 mRNA downstream 54143 6916990 ~ 6942356 (+) False LOC110487851
XR_005041378.1 mRNA downstream 54143 6916990 ~ 6942356 (+) False LOC110487851
XR_005041379.1 mRNA downstream 54143 6916990 ~ 6942356 (+) False LOC110487851
XR_005041380.1 mRNA downstream 54143 6916990 ~ 6942356 (+) False LOC110487851
TU2620737 other upstream 541705 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 696683 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 710156 6147824 ~ 6148246 (+) True G2291490
TU2620437 other upstream 1108944 5739422 ~ 5749458 (+) True wipf3
TU2620421 other upstream 1119457 5724386 ~ 5738945 (+) False wipf3
TU2621799 other downstream 19530 6882377 ~ 6883166 (+) True G2292347
TU2622167 other downstream 327405 7190252 ~ 7190850 (+) True G2292666
TU2622774 other downstream 983832 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 1051777 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 1212840 8075687 ~ 8078381 (+) False G2293430

Expression Profile