RNA id: TU2622138


Basic Information

Item Value
RNA id TU2622138
length 352
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2292639
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7159688 ~ 7160039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCTGATGGTCGGTGTAAGTGACAATAAAACATTGTTATTATTGGTTCTTTGGTATTGGGGTTGCGTCTCATTCTGTGACACATGGAACACTTTTAGGGGAGAGAGGAAATTACCATTTGCTGGAACCGATGGGAACATACTAGTAAATACACTGCTGCTGATGTTGGGTTGCGTCTCATTCTGCTGATGTTGATGTGTGATATTGGTATTGGGGTTGAGTCTCATTCTGCTGATGTTGATGTGTGATATTGGTATTGGGGTTGCGTCTCATTCTGCTGATGTTGATGTGTGATATTGGTATTGGGGTTGCGTCTCATTCTGCTGATGTTGATGTGTGATATTGGTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2622096 lncRNA upstream 41375 7116778 ~ 7118313 (+) True G2292604
TU2622095 lncRNA upstream 43094 7116323 ~ 7116594 (+) True G2292603
TU2621914 lncRNA upstream 47027 7109557 ~ 7112661 (+) True G2292445
TU2621850 lncRNA upstream 168641 6990633 ~ 6991047 (+) True G2292385
TU2621846 lncRNA upstream 168699 6990633 ~ 6990989 (+) False G2292385
TU2622149 lncRNA downstream 9945 7169984 ~ 7170212 (+) True G2292650
TU2622161 lncRNA downstream 19768 7179807 ~ 7180290 (+) True G2292660
TU2622163 lncRNA downstream 22260 7182299 ~ 7182679 (+) True G2292662
TU2622165 lncRNA downstream 26994 7187033 ~ 7187293 (+) True G2292664
TU2622172 lncRNA downstream 39383 7199422 ~ 7199714 (+) True G2292671
XR_005041290.1 mRNA upstream 114929 7016230 ~ 7044759 (+) True LOC110487852
XM_036970885.1 mRNA upstream 119978 7016230 ~ 7039710 (+) False LOC110487852
XM_036970886.1 mRNA upstream 119978 7016230 ~ 7039710 (+) False LOC110487852
XR_005041380.1 mRNA upstream 217332 6916990 ~ 6942356 (+) False LOC110487851
XM_036971393.1 mRNA downstream 367324 7527363 ~ 7563038 (+) False LOC110487858
XM_036970850.1 mRNA downstream 411811 7571850 ~ 7590800 (+) False LOC110487859
XM_036970851.1 mRNA downstream 411811 7571850 ~ 7590800 (+) False LOC110487859
XM_036970852.1 mRNA downstream 411878 7571917 ~ 7590800 (+) True LOC110487859
XM_036971173.1 mRNA downstream 641852 7801891 ~ 7846316 (+) True LOC110489363
TU2621799 other upstream 276522 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 842991 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 997969 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 1011442 6147824 ~ 6148246 (+) True G2291490
TU2620437 other upstream 1410230 5739422 ~ 5749458 (+) True wipf3
TU2622167 other downstream 30213 7190252 ~ 7190850 (+) True G2292666
TU2622774 other downstream 686640 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 754585 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 915648 8075687 ~ 8078381 (+) False G2293430
TU2623111 other downstream 915648 8075687 ~ 8078381 (+) True G2293430

Expression Profile