RNA id: TU2622176


Basic Information

Item Value
RNA id TU2622176
length 209
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G2292675
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7203443 ~ 7206802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagaggggtagagatagagagaggtagagagagaaaggtagacagagaggtagaggtagagagagaaaggtagaggtagagagagagagaggtagagagagagagaaaggtagcggtagagagagaggaagaggtagagagagaaaggtagcggtagagagagaggaagaggtagagagagagagaggtagaggtagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2622172 lncRNA upstream 3729 7199422 ~ 7199714 (+) True G2292671
TU2622165 lncRNA upstream 16150 7187033 ~ 7187293 (+) True G2292664
TU2622163 lncRNA upstream 20764 7182299 ~ 7182679 (+) True G2292662
TU2622161 lncRNA upstream 23153 7179807 ~ 7180290 (+) True G2292660
TU2622149 lncRNA upstream 33231 7169984 ~ 7170212 (+) True G2292650
TU2622185 lncRNA downstream 8528 7214985 ~ 7215817 (+) True G2292683
TU2622233 lncRNA downstream 41631 7248088 ~ 7257636 (+) True G2292720
TU2622237 lncRNA downstream 43024 7249481 ~ 7253003 (+) True G2292721
TU2622223 lncRNA downstream 43412 7249869 ~ 7255720 (+) False G2292719
TU2622226 lncRNA downstream 43412 7249869 ~ 7258282 (+) False G2292719
XR_005041290.1 mRNA upstream 158684 7016230 ~ 7044759 (+) True LOC110487852
XM_036970885.1 mRNA upstream 163733 7016230 ~ 7039710 (+) False LOC110487852
XM_036970886.1 mRNA upstream 163733 7016230 ~ 7039710 (+) False LOC110487852
XR_005041380.1 mRNA upstream 261087 6916990 ~ 6942356 (+) False LOC110487851
XM_036971393.1 mRNA downstream 320906 7527363 ~ 7563038 (+) False LOC110487858
XM_036970850.1 mRNA downstream 365393 7571850 ~ 7590800 (+) False LOC110487859
XM_036970851.1 mRNA downstream 365393 7571850 ~ 7590800 (+) False LOC110487859
XM_036970852.1 mRNA downstream 365460 7571917 ~ 7590800 (+) True LOC110487859
XM_036971173.1 mRNA downstream 595434 7801891 ~ 7846316 (+) True LOC110489363
TU2622167 other upstream 12593 7190252 ~ 7190850 (+) True G2292666
TU2621799 other upstream 320277 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 886746 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 1041724 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 1055197 6147824 ~ 6148246 (+) True G2291490
TU2622774 other downstream 640222 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 708167 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 869230 8075687 ~ 8078381 (+) False G2293430
TU2623111 other downstream 869230 8075687 ~ 8078381 (+) True G2293430
TU2623152 other downstream 899171 8105628 ~ 8106009 (+) True G2293464

Expression Profile