RNA id: TU2622226


Basic Information

Item Value
RNA id TU2622226
length 239
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G2292719
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7249869 ~ 7260410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagtggtatagtgatgatagtgatatagtgatgatagtgatatagtgatgatagtggtatagtgatgatagtggtatagtgatgatagtggtatagtgatgatagtggtatagtgatgagaGTGATATAGTGATGCTAGTGATAGtaatgatagtggtatagtgatgatagtggtatagtgttgatagtggtatagtgatgatagtggtataatggtatagtgttGATAGTGGTATat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2622185 lncRNA upstream 34052 7214985 ~ 7215817 (+) True G2292683
TU2622177 lncRNA upstream 43067 7203443 ~ 7206802 (+) True G2292675
TU2622176 lncRNA upstream 43412 7203443 ~ 7206457 (+) False G2292675
TU2622172 lncRNA upstream 50155 7199422 ~ 7199714 (+) True G2292671
TU2622165 lncRNA upstream 62576 7187033 ~ 7187293 (+) True G2292664
TU2622266 lncRNA downstream 57553 7315835 ~ 7316657 (+) True G2292747
TU2622284 lncRNA downstream 86511 7344793 ~ 7345684 (+) True G2292765
TU2622359 lncRNA downstream 104592 7362874 ~ 7363111 (+) True G2292827
TU2622382 lncRNA downstream 128922 7387204 ~ 7387487 (+) True G2292850
TU2622383 lncRNA downstream 129574 7387856 ~ 7388083 (+) True G2292851
XR_005041290.1 mRNA upstream 205110 7016230 ~ 7044759 (+) True LOC110487852
XM_036970885.1 mRNA upstream 210159 7016230 ~ 7039710 (+) False LOC110487852
XM_036970886.1 mRNA upstream 210159 7016230 ~ 7039710 (+) False LOC110487852
XR_005041380.1 mRNA upstream 307513 6916990 ~ 6942356 (+) False LOC110487851
XM_036971393.1 mRNA downstream 269081 7527363 ~ 7563038 (+) False LOC110487858
XM_036970850.1 mRNA downstream 313568 7571850 ~ 7590800 (+) False LOC110487859
XM_036970851.1 mRNA downstream 313568 7571850 ~ 7590800 (+) False LOC110487859
XM_036970852.1 mRNA downstream 313635 7571917 ~ 7590800 (+) True LOC110487859
XM_036971173.1 mRNA downstream 543609 7801891 ~ 7846316 (+) True LOC110489363
TU2622167 other upstream 59019 7190252 ~ 7190850 (+) True G2292666
TU2621799 other upstream 366703 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 933172 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 1088150 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 1101623 6147824 ~ 6148246 (+) True G2291490
TU2622774 other downstream 588397 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 656342 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 817405 8075687 ~ 8078381 (+) False G2293430
TU2623111 other downstream 817405 8075687 ~ 8078381 (+) True G2293430
TU2623152 other downstream 847346 8105628 ~ 8106009 (+) True G2293464

Expression Profile