RNA id: TU2622382


Basic Information

Item Value
RNA id TU2622382
length 284
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2292850
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7387204 ~ 7387487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaacaaacacagagacaggaacaatcacccacgaaacactcaaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacttgcctctgattgagaaccactctaggcaaccatagacttacctagacaactctactaACCACAATCCCAAAACCTataaaaaccccaagacaaaacacaccacataaataacccatgtcacaccctggcctgaccaaaataataaagaaaacacaaaatactaagaccagggcgtgacaacactgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2622359 lncRNA upstream 24093 7362874 ~ 7363111 (+) True G2292827
TU2622284 lncRNA upstream 41520 7344793 ~ 7345684 (+) True G2292765
TU2622266 lncRNA upstream 70547 7315835 ~ 7316657 (+) True G2292747
TU2622224 lncRNA upstream 126794 7255334 ~ 7260410 (+) True G2292719
TU2622226 lncRNA upstream 128922 7249869 ~ 7258282 (+) False G2292719
TU2622383 lncRNA downstream 369 7387856 ~ 7388083 (+) True G2292851
TU2622384 lncRNA downstream 964 7388451 ~ 7388681 (+) True G2292852
TU2622395 lncRNA downstream 5946 7393433 ~ 7393648 (+) True G2292863
TU2622405 lncRNA downstream 13625 7401112 ~ 7401346 (+) True G2292873
TU2622418 lncRNA downstream 27288 7414775 ~ 7415089 (+) True G2292882
XR_005041290.1 mRNA upstream 342445 7016230 ~ 7044759 (+) True LOC110487852
XM_036970885.1 mRNA upstream 347494 7016230 ~ 7039710 (+) False LOC110487852
XM_036970886.1 mRNA upstream 347494 7016230 ~ 7039710 (+) False LOC110487852
XR_005041380.1 mRNA upstream 444848 6916990 ~ 6942356 (+) False LOC110487851
XM_036971393.1 mRNA downstream 139876 7527363 ~ 7563038 (+) False LOC110487858
XM_036970850.1 mRNA downstream 184363 7571850 ~ 7590800 (+) False LOC110487859
XM_036970851.1 mRNA downstream 184363 7571850 ~ 7590800 (+) False LOC110487859
XM_036970852.1 mRNA downstream 184430 7571917 ~ 7590800 (+) True LOC110487859
XM_036971173.1 mRNA downstream 414404 7801891 ~ 7846316 (+) True LOC110489363
TU2622167 other upstream 196354 7190252 ~ 7190850 (+) True G2292666
TU2621799 other upstream 504038 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 1070507 6308136 ~ 6316697 (+) True G2291541
TU2620690 other upstream 1225485 6161078 ~ 6161719 (+) True G2291498
TU2620681 other upstream 1238958 6147824 ~ 6148246 (+) True G2291490
TU2622774 other downstream 459192 7846679 ~ 7847462 (+) True G2293172
TU2622846 other downstream 527137 7914624 ~ 7917597 (+) False e2f3
TU2623110 other downstream 688200 8075687 ~ 8078381 (+) False G2293430
TU2623111 other downstream 688200 8075687 ~ 8078381 (+) True G2293430
TU2623152 other downstream 718141 8105628 ~ 8106009 (+) True G2293464

Expression Profile