RNA id: TU2623110


Basic Information

Item Value
RNA id TU2623110
length 2601
RNA type TUCP
GC content 0.48
exon number 3
gene id G2293430
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8075687 ~ 8078381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgcgtgtgtgtgtgtatatccccTTACTTGAACCTGAACTATCTCCCCTACAGTAGGGTATTGTACTATCTTGTCTTTGACATAATGTTCACTTCGCTAATCAGCTTGCGCTAATATCATTACAGCCCGTATATATGGAAACGCTACATATGCTGtgctgtgtttgtgtctctctctctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaggagagagagtgagaatgagagagggagaacaagagaaacagagaacgagagagggagaacgagagagaatgagagagggagatcgagagagggagaacgagagagggagaacgagaaagagaaaaagagaacgagagagggagaacgagaaagagaaaaagagaacgagagagggagaacgagagagagagaaaaagagaacgagagagggagaacgagagagggagaacgagagagggagaacgagggaGAACGGGAGAGGGAGaacgggagagggagaaggagagagggagaatgagaacgagagagggagaacgagagagggagaacgagagagggagaacgaaagaaagagaacgagagagagagcaatagagagagagaaaaaagggtaagtagagagatggaaagaatgGTTAAGAGAGATAAAGTCTGTCTCATCGTCATTggcgatcaggcctaccaccgtcttgttgtcagcaaacttaatgatggtgttggagttgtgcgcgGCCGCTCAGTCTTGGGtgagaacaggaggggactaggCACCATGAGGAACCCCTGGGGCGGACGTGTTGTTGccttccctcaccacctgggggctgcccgtccCTCCAGgatccctcaccacctggggtctgcccgtcaggaagtccaggatccctcACCCCCTGGggtctgcccgtcaggaagtccaggatccctcaaaacctgggggcggcccatcaggaagtccaggatccctcaccacctgggggcggcccgtcaggaagtccaggatccctcaccacctgggggcagcccatcaggaagtccaggatccagttgcagatggagatGTTCAGTCCCATGGTCctgagcttgatgatgagcttggattgcactatggtgttaaatgctgagctgtagtcaatgaacaacattctcacatagttgttcCTCTTAGCCAattgggagagggcagtgtggagtgcaataatgATTGCGTCTTCTTTGGATCTGTTGGGAGTGTTATGGAAATGGAGTctgtccagggtgtctgggatgatgctgttgataTGATCCATGACCAGCCtgtcaaagcatttcatggctacagatgtgagtgctacggtgcGATTGCTATTTatacaggttaccttggcgttcttgggcacagggactatggtggtctgcttgaaacatgtaggtacagtattacagtcagggaaaggttgaacatgtcagtgaagacacttgccagctggtcagcgcatgctctgagcacACTTCCTGATATTCCATCTGGCCCCACGatcttgtgaatgttaacctgtttaaaggtcttactcatagtcgtctggaacagctggtgctctcatacatggttcagtgttgcttgcctcgaagtgagcatagaaggaatttagcttgtctggtaggtttgcgactgggtttccctttgtaatccctGATAGTTTAAAATCCCTGCTACATCTGAAGAGCACCAGAGTCGACGTAGTAGGATTCaattttagtcctgtattgatgctttgcctgtttgatggctagTTTGAGGTCCTATTAGCGTCCAAATTAGTGTCGacctccttgaaagcggcagctgaCCTTTAgttcagtgcagatgttgcctgtaatccaaggtttctggttgggatatgtacgtacggccactgtggggacgatgtcgtcaatgcacttatttatgattccggtgactgatgtggtgtactcttcaatgttattggatgaatcctggaacatattccgcTCTGTGCTAGTGAACCAATCCTGTAGCTTAGCAaccgcttcatcggaccacttccttATTAAgtgctggtacttcctgtttgagtttttgcttgtattTAGAAATCAAAGGGAGGGTGAGGAATAGCATTCAATTTcaatgtgtggagtaaagatgatCAAGAGTATTGTCGCCTTCTTGTCACAGAGGTGACATGTTGGTAAAAATGAGGTAGAAtgggatttcagtttccctgcattaaaatcactgtACACTAGAGcgcagcattttcttgtttgcttacaGCTCATTTAGTGCGATCTTAAAGCATTGGTTTGTTGTGGTAGATAGACAGCTACGGAAAATATAGATGACAACTCTCTTGGAAAATAGCATGGAGAGCAGGACCTTCCTTGATATTAGAGATTGCATACCAGCTGTTGTTGACAAAGAGACACACCCATCCCCACTTAGTCTTACCTCAGACTGCCGTCTGATCTAGACATGGAGACAAGATATATATTATCCACCTCATTGTTCATCCAAAactcagtgtgtgagtgtgtgcagagCAATGGTCTTAattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623067 lncRNA upstream 53636 8021074 ~ 8022051 (+) True G2293394
TU2623049 lncRNA upstream 64859 8010616 ~ 8010828 (+) True G2293381
TU2623039 lncRNA upstream 73505 8001682 ~ 8002182 (+) True G2293374
TU2623025 lncRNA upstream 85565 7986111 ~ 7990122 (+) True G2293360
TU2623022 lncRNA upstream 90212 7983433 ~ 7985475 (+) True G2293358
TU2623125 lncRNA downstream 6334 8084715 ~ 8084954 (+) True G2293441
TU2623128 lncRNA downstream 9528 8087909 ~ 8090525 (+) False G2293443
TU2623129 lncRNA downstream 9528 8087909 ~ 8088976 (+) True G2293443
TU2623150 lncRNA downstream 26633 8105014 ~ 8105298 (+) True G2293462
TU2623175 lncRNA downstream 66844 8145225 ~ 8145792 (+) True G2293486
XM_036971314.1 mRNA upstream 156237 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 196111 7879139 ~ 7879576 (+) False LOC118946479
XM_036971173.1 mRNA upstream 229371 7801891 ~ 7846316 (+) True LOC110489363
XM_036970850.1 mRNA upstream 484887 7571850 ~ 7590800 (+) False LOC110487859
XM_021559778.2 mRNA downstream 120283 8198664 ~ 8202360 (+) False LOC110487863
XM_036971670.1 mRNA downstream 332023 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_036971683.1 mRNA downstream 425243 8503624 ~ 8506000 (+) True tnfa
LOC118946524 mRNA downstream 748529 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 813258 8891639 ~ 8896196 (+) True LOC110487872
TU2622846 other upstream 158090 7914624 ~ 7917597 (+) False e2f3
TU2622774 other upstream 228225 7846679 ~ 7847462 (+) True G2293172
TU2622167 other upstream 884837 7190252 ~ 7190850 (+) True G2292666
TU2621799 other upstream 1192521 6882377 ~ 6883166 (+) True G2292347
TU2620737 other upstream 1758990 6308136 ~ 6316697 (+) True G2291541
TU2623152 other downstream 27247 8105628 ~ 8106009 (+) True G2293464
TU2623385 other downstream 271832 8350213 ~ 8350683 (+) True G2293677
TU2623594 other downstream 432491 8510872 ~ 8511741 (+) False G2293829
TU2623733 other downstream 712720 8791101 ~ 8795502 (+) False G2293942
TU2623736 other downstream 712720 8791101 ~ 8795502 (+) False G2293942

Expression Profile