RNA id: TU2623150


Basic Information

Item Value
RNA id TU2623150
length 285
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2293462
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8105014 ~ 8105298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgttatggtgcgtgaatgaggacccaaaagcgaattaacaaacagagtactttaatgacgaacatacgtgggctcagatggacaggtagattccgacaggacaggacaaggttgcagcacacacgatgatagtctggttcaggcatgagacacataaacaaacaaacaagaatccgacaaggacaggagcagaaacagagacagatatagggacctaatcagagggaaaaagggaacaggtggggaacggggtgaatgggtaattaggaggagacaaggcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623128 lncRNA upstream 14489 8087909 ~ 8090525 (+) False G2293443
TU2623129 lncRNA upstream 16038 8087909 ~ 8088976 (+) True G2293443
TU2623125 lncRNA upstream 20060 8084715 ~ 8084954 (+) True G2293441
TU2623067 lncRNA upstream 82963 8021074 ~ 8022051 (+) True G2293394
TU2623049 lncRNA upstream 94186 8010616 ~ 8010828 (+) True G2293381
TU2623175 lncRNA downstream 39927 8145225 ~ 8145792 (+) True G2293486
TU2623186 lncRNA downstream 56148 8161446 ~ 8162454 (+) True G2293496
TU2623197 lncRNA downstream 64821 8170119 ~ 8170389 (+) True G2293507
TU2623200 lncRNA downstream 65837 8171135 ~ 8171351 (+) True G2293510
TU2623202 lncRNA downstream 66552 8171850 ~ 8172137 (+) True G2293512
XM_036971314.1 mRNA upstream 185564 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 225438 7879139 ~ 7879576 (+) False LOC118946479
XM_036971173.1 mRNA upstream 258698 7801891 ~ 7846316 (+) True LOC110489363
XM_036970851.1 mRNA upstream 514214 7571850 ~ 7590800 (+) False LOC110487859
XM_021559778.2 mRNA downstream 93366 8198664 ~ 8202360 (+) False LOC110487863
XM_036971670.1 mRNA downstream 305106 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_036971683.1 mRNA downstream 398326 8503624 ~ 8506000 (+) True tnfa
LOC118946524 mRNA downstream 721612 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 786341 8891639 ~ 8896196 (+) True LOC110487872
TU2623110 other upstream 26633 8075687 ~ 8078381 (+) False G2293430
TU2623111 other upstream 26633 8075687 ~ 8078381 (+) True G2293430
TU2622846 other upstream 187417 7914624 ~ 7917597 (+) False e2f3
TU2622774 other upstream 257552 7846679 ~ 7847462 (+) True G2293172
TU2622167 other upstream 914164 7190252 ~ 7190850 (+) True G2292666
TU2623152 other downstream 330 8105628 ~ 8106009 (+) True G2293464
TU2623385 other downstream 244915 8350213 ~ 8350683 (+) True G2293677
TU2623594 other downstream 405574 8510872 ~ 8511741 (+) False G2293829
TU2623733 other downstream 685803 8791101 ~ 8795502 (+) False G2293942
TU2623736 other downstream 685803 8791101 ~ 8795502 (+) False G2293942

Expression Profile