RNA id: TU2623385


Basic Information

Item Value
RNA id TU2623385
length 471
RNA type TUCP
GC content 0.54
exon number 1
gene id G2293677
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8350213 ~ 8350683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgacaggctgcccccaggtggtgaggataggaaacaacatctccaccccgctgatcctcaacactggggccccacaagggtgcgttctgagccctctcctgtactccctgttcacccacgactgcgtggccatgcacgcctccaactcaatcatcaactttgcagacgacaccacagtggtaggcttgattaccaacaatgacgagatggcctacagggaggaggtgagggccctcggagtgtggtgtcaggaaaataacctcacactcaacgtcaacaaaacaaaggagatgatcgtggacttcaggaaacagcagagggagcacccccctatccacatcgacgggacagtagtggagagggtagtaagttaagttcctctgcgtacatatcacggacaaactgaattggttcacccgcacagacagcgttgtgaagaaggcacagcagcgcctctataacctcaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623362 lncRNA upstream 16897 8333025 ~ 8333316 (+) True G2293657
TU2623282 lncRNA upstream 61543 8287735 ~ 8288670 (+) True G2293582
TU2623280 lncRNA upstream 63624 8286241 ~ 8286589 (+) True G2293580
TU2623245 lncRNA upstream 133229 8216739 ~ 8216984 (+) True G2293546
TU2623239 lncRNA upstream 135957 8213976 ~ 8214256 (+) True G2293540
TU2623396 lncRNA downstream 9785 8360468 ~ 8360708 (+) True G2293688
TU2623405 lncRNA downstream 17935 8368618 ~ 8373460 (+) True G2293695
TU2623406 lncRNA downstream 18331 8369014 ~ 8369409 (+) True G2293696
TU2623443 lncRNA downstream 53475 8404158 ~ 8404365 (+) True G2293725
TU2623458 lncRNA downstream 75220 8425903 ~ 8426616 (+) True G2293738
XM_021559778.2 mRNA upstream 147853 8198664 ~ 8202360 (+) False LOC110487863
XM_036971314.1 mRNA upstream 430763 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 470637 7879139 ~ 7879576 (+) False LOC118946479
XM_036971173.1 mRNA upstream 503897 7801891 ~ 7846316 (+) True LOC110489363
XM_036970851.1 mRNA upstream 759413 7571850 ~ 7590800 (+) False LOC110487859
XM_036971670.1 mRNA downstream 59721 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_036971683.1 mRNA downstream 152941 8503624 ~ 8506000 (+) True tnfa
LOC118946524 mRNA downstream 476227 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 540956 8891639 ~ 8896196 (+) True LOC110487872
XM_036970929.1 mRNA downstream 556767 8907450 ~ 8934029 (+) False LOC110489365
TU2623152 other upstream 244204 8105628 ~ 8106009 (+) True G2293464
TU2623110 other upstream 271832 8075687 ~ 8078381 (+) False G2293430
TU2623111 other upstream 271832 8075687 ~ 8078381 (+) True G2293430
TU2622846 other upstream 432616 7914624 ~ 7917597 (+) False e2f3
TU2622774 other upstream 502751 7846679 ~ 7847462 (+) True G2293172
TU2623594 other downstream 160189 8510872 ~ 8511741 (+) False G2293829
TU2623733 other downstream 440418 8791101 ~ 8795502 (+) False G2293942
TU2623736 other downstream 440418 8791101 ~ 8795502 (+) False G2293942
TU2623741 other downstream 440418 8791101 ~ 8795502 (+) False G2293942
TU2623742 other downstream 440418 8791101 ~ 8795502 (+) False G2293942

Expression Profile