RNA id: TU2623396


Basic Information

Item Value
RNA id TU2623396
length 241
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G2293688
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8360468 ~ 8360708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctaggaacaggaggtctaggaacggtgggttaactggcctaggaacagtgggttaactggtctaggaacagtgggttaactgcctgttcaggggcagaatgacagatttgtaccttgtcagctcggggattcgatcttgcaaccttttcagttactagtacaacgctctaaccgctaggctacctgccaccccaacctgacagattggagtccacctgtggtaaattcaattgattgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623362 lncRNA upstream 27152 8333025 ~ 8333316 (+) True G2293657
TU2623282 lncRNA upstream 71798 8287735 ~ 8288670 (+) True G2293582
TU2623280 lncRNA upstream 73879 8286241 ~ 8286589 (+) True G2293580
TU2623245 lncRNA upstream 143484 8216739 ~ 8216984 (+) True G2293546
TU2623239 lncRNA upstream 146212 8213976 ~ 8214256 (+) True G2293540
TU2623405 lncRNA downstream 7910 8368618 ~ 8373460 (+) True G2293695
TU2623406 lncRNA downstream 8306 8369014 ~ 8369409 (+) True G2293696
TU2623443 lncRNA downstream 43450 8404158 ~ 8404365 (+) True G2293725
TU2623458 lncRNA downstream 65195 8425903 ~ 8426616 (+) True G2293738
TU2623468 lncRNA downstream 78955 8439663 ~ 8440047 (+) True G2293746
XM_021559778.2 mRNA upstream 158108 8198664 ~ 8202360 (+) False LOC110487863
XM_036971314.1 mRNA upstream 441018 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 480892 7879139 ~ 7879576 (+) False LOC118946479
XM_036971173.1 mRNA upstream 514152 7801891 ~ 7846316 (+) True LOC110489363
XM_036970852.1 mRNA upstream 769668 7571917 ~ 7590800 (+) True LOC110487859
XM_036971670.1 mRNA downstream 49696 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_036971683.1 mRNA downstream 142916 8503624 ~ 8506000 (+) True tnfa
LOC118946524 mRNA downstream 466202 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 530931 8891639 ~ 8896196 (+) True LOC110487872
XM_036970929.1 mRNA downstream 546742 8907450 ~ 8934029 (+) False LOC110489365
TU2623385 other upstream 9785 8350213 ~ 8350683 (+) True G2293677
TU2623152 other upstream 254459 8105628 ~ 8106009 (+) True G2293464
TU2623110 other upstream 282087 8075687 ~ 8078381 (+) False G2293430
TU2623111 other upstream 282087 8075687 ~ 8078381 (+) True G2293430
TU2622846 other upstream 442871 7914624 ~ 7917597 (+) False e2f3
TU2623594 other downstream 150164 8510872 ~ 8511741 (+) False G2293829
TU2623733 other downstream 430393 8791101 ~ 8795502 (+) False G2293942
TU2623736 other downstream 430393 8791101 ~ 8795502 (+) False G2293942
TU2623741 other downstream 430393 8791101 ~ 8795502 (+) False G2293942
TU2623742 other downstream 430393 8791101 ~ 8795502 (+) False G2293942

Expression Profile