RNA id: TU2623468


Basic Information

Item Value
RNA id TU2623468
length 309
lncRNA type intronic
GC content 0.44
exon number 2
gene id G2293746
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8439663 ~ 8440047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggtaggtagagccatatacacacacacacaggtaggtagagccatatacacacacaggaagagcCATAAATACAAACAGGAAGAGCCATAAATACAAACATATCTCTACTAGTCTCATATGTGTGTATATGGCTCTGGTAGTGGGTGGGACTACAAACAGGTCTATTACTATCAGTGGTGTGGGGAAGGCAGCCAGGGACATTGTTAGGGGCAGTGTATCTGATATCAGGGTAACCATAGCAGCCTGGTACCTGGGAGGCTAGCTCCAATATATGAtcatatatctacagtatattgtagATTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623458 lncRNA upstream 13047 8425903 ~ 8426616 (+) True G2293738
TU2623443 lncRNA upstream 35298 8404158 ~ 8404365 (+) True G2293725
TU2623405 lncRNA upstream 66203 8368618 ~ 8373460 (+) True G2293695
TU2623406 lncRNA upstream 70254 8369014 ~ 8369409 (+) True G2293696
TU2623396 lncRNA upstream 78955 8360468 ~ 8360708 (+) True G2293688
TU2623582 lncRNA downstream 70228 8510275 ~ 8510600 (+) True G2293828
TU2623583 lncRNA downstream 70825 8510872 ~ 8511741 (+) False G2293829
TU2623586 lncRNA downstream 70825 8510872 ~ 8511741 (+) False G2293829
TU2623588 lncRNA downstream 70825 8510872 ~ 8511741 (+) False G2293829
TU2623589 lncRNA downstream 70825 8510872 ~ 8511741 (+) False G2293829
XM_036971670.1 mRNA upstream 18899 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_021559778.2 mRNA upstream 237303 8198664 ~ 8202360 (+) False LOC110487863
XM_036971314.1 mRNA upstream 520213 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 560087 7879139 ~ 7879576 (+) False LOC118946479
XM_036971173.1 mRNA upstream 593347 7801891 ~ 7846316 (+) True LOC110489363
XM_036971683.1 mRNA downstream 63577 8503624 ~ 8506000 (+) True tnfa
LOC118946524 mRNA downstream 386863 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 451592 8891639 ~ 8896196 (+) True LOC110487872
XM_036970929.1 mRNA downstream 467403 8907450 ~ 8934029 (+) False LOC110489365
XM_036970930.1 mRNA downstream 467748 8907795 ~ 8934029 (+) False LOC110489365
TU2623385 other upstream 88980 8350213 ~ 8350683 (+) True G2293677
TU2623152 other upstream 333654 8105628 ~ 8106009 (+) True G2293464
TU2623110 other upstream 361282 8075687 ~ 8078381 (+) False G2293430
TU2623111 other upstream 361282 8075687 ~ 8078381 (+) True G2293430
TU2622846 other upstream 522066 7914624 ~ 7917597 (+) False e2f3
TU2623594 other downstream 70825 8510872 ~ 8511741 (+) False G2293829
TU2623733 other downstream 351054 8791101 ~ 8795502 (+) False G2293942
TU2623736 other downstream 351054 8791101 ~ 8795502 (+) False G2293942
TU2623741 other downstream 351054 8791101 ~ 8795502 (+) False G2293942
TU2623742 other downstream 351054 8791101 ~ 8795502 (+) False G2293942

Expression Profile