RNA id: TU2623597


Basic Information

Item Value
RNA id TU2623597
length 751
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2293829
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8510872 ~ 8511770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattcaaaTACCATATGTATACTACGTATGTATGAGCAAGATAATACATTTATCATAATAATCATTTTACACAATGTCAATATTGTCCATATCCTCGTTTTGTATAAACATCACTGGTATCATTACAGTATTCCCGACTACACAGAGCTcgctatacattatatatattatacatttacatacagaatactgaCGACCATATGTACAGACGGGCATGAGGACTGGGTTGTACAATGTTCTCGTTATAACGCGTACATAAACAGCTTCATAAGTACTACGCAGAGATTCATAAGTGCTTCACAACAAGACAACTCATATCACAGTCATTTAACAAGCTGGATACTGTACCACACTAGGGTCTAGTGAATGAACACGAGGGTAGAGGTGCTGTTACTAGAATTGAGCAGGTGCCGTTACTAGAACTGTCAAGAGGTGCTGTTACTAGAACTGAGCAGAGGTGCTGTTACTAGAACTGAGCAAGTGCTGTTACTAGAACTGAGCAGGTGCCGTTACTAGAACTGAGCAGGTGCCTTTACTAGAACTGAGCAGAGGTGCTGTTACTAGAACTGAGCAGGTGCTGCGTCGTACTGGTCCAGAGAGGGAGATGCGCTGTACGCCGTATGCCTGTCTAAATTAACATTGCTTTTCCTCATCATCACAAAGCTGATAATCAAGTCCACCCTAGGgaccttggtctaaagtagtgcactactaccctggtctaaagtagtgcattactaccctatagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623582 lncRNA upstream 272 8510275 ~ 8510600 (+) True G2293828
TU2623468 lncRNA upstream 70825 8439663 ~ 8440047 (+) True G2293746
TU2623458 lncRNA upstream 84256 8425903 ~ 8426616 (+) True G2293738
TU2623443 lncRNA upstream 106507 8404158 ~ 8404365 (+) True G2293725
TU2623406 lncRNA upstream 141463 8369014 ~ 8369409 (+) True G2293696
TU2623604 lncRNA downstream 165 8511906 ~ 8515666 (+) True G2293831
TU2623626 lncRNA downstream 60774 8572515 ~ 8573927 (+) True G2293853
TU2623665 lncRNA downstream 117815 8629556 ~ 8630685 (+) True G2293884
TU2623682 lncRNA downstream 194241 8705982 ~ 8707683 (+) True G2293900
TU2623684 lncRNA downstream 199884 8711625 ~ 8711973 (+) True G2293901
XM_036971683.1 mRNA upstream 4872 8503624 ~ 8506000 (+) True tnfa
XM_036971670.1 mRNA upstream 90108 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_021559778.2 mRNA upstream 308512 8198664 ~ 8202360 (+) False LOC110487863
XM_036971314.1 mRNA upstream 591422 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 631296 7879139 ~ 7879576 (+) False LOC118946479
LOC118946524 mRNA downstream 315169 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 379898 8891639 ~ 8896196 (+) True LOC110487872
XM_036970929.1 mRNA downstream 395709 8907450 ~ 8934029 (+) False LOC110489365
XM_036970930.1 mRNA downstream 396054 8907795 ~ 8934029 (+) False LOC110489365
XM_021559790.2 mRNA downstream 422389 8934130 ~ 8942477 (+) False LOC110487875
TU2623385 other upstream 160189 8350213 ~ 8350683 (+) True G2293677
TU2623152 other upstream 404863 8105628 ~ 8106009 (+) True G2293464
TU2623110 other upstream 432491 8075687 ~ 8078381 (+) False G2293430
TU2623111 other upstream 432491 8075687 ~ 8078381 (+) True G2293430
TU2622846 other upstream 593275 7914624 ~ 7917597 (+) False e2f3
TU2623733 other downstream 279360 8791101 ~ 8795502 (+) False G2293942
TU2623736 other downstream 279360 8791101 ~ 8795502 (+) False G2293942
TU2623741 other downstream 279360 8791101 ~ 8795502 (+) False G2293942
TU2623742 other downstream 279360 8791101 ~ 8795502 (+) False G2293942
TU2623747 other downstream 279360 8791101 ~ 8795502 (+) False G2293942