RNA id: TU2623665


Basic Information

Item Value
RNA id TU2623665
length 434
lncRNA type intronic
GC content 0.42
exon number 3
gene id G2293884
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8629556 ~ 8630685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATATCCCAGTAAATTAGGTCCTGCTAGAATATCCCTCAGCCATAGCCCAGTAAATTAGGTCCTGATAGAATATCCCTCAGCCATATCCCAGTAAATTAGGTCCTGATTGAATATCCCTCAGCCAAAGCCCAGTAAATTAGGTCCCGCTAGAATATCCCTCAGCCATAGCCCAGTCAATTAGGTACTGATTGAATATCCCTCAGCCACATCCCAGTAAATTAGGTCCTGATTGAATATCCCTCAGCCATATCCCAGTAAATTAGGTCCTGATAGAATATCCCTCAGCCACATCCCAGTAAATTAGGTCCTGATTGAATATCCCTCAGCCATATCCCAGTAAATTAGGTCCTGCTAATGTATTAAACATTTTCATTGATCAACTGCAATGTGAGCTGGTAAGTTAAAATGGCACcgatttcctatatagtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623626 lncRNA upstream 55629 8572515 ~ 8573927 (+) True G2293853
TU2623604 lncRNA upstream 113890 8511906 ~ 8515666 (+) True G2293831
TU2623595 lncRNA upstream 117786 8510872 ~ 8511770 (+) False G2293829
TU2623682 lncRNA downstream 75297 8705982 ~ 8707683 (+) True G2293900
TU2623684 lncRNA downstream 80940 8711625 ~ 8711973 (+) True G2293901
TU2623750 lncRNA downstream 160416 8791101 ~ 8876464 (+) True G2293942
TU2623806 lncRNA downstream 217239 8847924 ~ 8848431 (+) True G2293988
TU2623819 lncRNA downstream 275876 8906561 ~ 8906828 (+) True G2294000
XM_036971683.1 mRNA upstream 123556 8503624 ~ 8506000 (+) True tnfa
XM_036971670.1 mRNA upstream 208792 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_021559778.2 mRNA upstream 427196 8198664 ~ 8202360 (+) False LOC110487863
XM_036971314.1 mRNA upstream 710106 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 749980 7879139 ~ 7879576 (+) False LOC118946479
LOC118946524 mRNA downstream 196225 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 260954 8891639 ~ 8896196 (+) True LOC110487872
XM_036970929.1 mRNA downstream 276765 8907450 ~ 8934029 (+) False LOC110489365
XM_036970930.1 mRNA downstream 277110 8907795 ~ 8934029 (+) False LOC110489365
XM_021559790.2 mRNA downstream 303445 8934130 ~ 8942477 (+) False LOC110487875
TU2623594 other upstream 117815 8510872 ~ 8511741 (+) False G2293829
TU2623385 other upstream 278873 8350213 ~ 8350683 (+) True G2293677
TU2623152 other upstream 523547 8105628 ~ 8106009 (+) True G2293464
TU2623110 other upstream 551175 8075687 ~ 8078381 (+) False G2293430
TU2623733 other downstream 160416 8791101 ~ 8795502 (+) False G2293942
TU2623736 other downstream 160416 8791101 ~ 8795502 (+) False G2293942
TU2623741 other downstream 160416 8791101 ~ 8795502 (+) False G2293942
TU2623742 other downstream 160416 8791101 ~ 8795502 (+) False G2293942
TU2623747 other downstream 160416 8791101 ~ 8795502 (+) False G2293942

Expression Profile