RNA id: TU2623747


Basic Information

Item Value
RNA id TU2623747
length 4009
RNA type TUCP
GC content 0.46
exon number 4
gene id G2293942
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8791101 ~ 8876464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGAAATAGCATCACATTCCATAAATTACCATGTACATGATTAATAAATTAACAttcatatcattattattatacattCACTACACTTTAAATAGTACccttgttccctacatagtgcactacttttgacaagggcccataagtagggcactatgtaaGGATTGTAGTACAGCTGTATTTTGGGATGCATCCCATTTACGTGAACAAATAAAACACGGTGTCAAGTGGAGCAGGAAAATGGGAAGACTTTCCATTAATGCTTcacacaccctattccctacatagtgcactacttttgaccaaggccctataggccctagtgcactatatagggaatagggtgccatttgggactgacGACTGATCCCCAAGTCAGCATTTATCAGCGAATGGATTTGGGGTagtgggaacattgtggggagCAGCAAATGTGAATATTGCCCAGGTGAAGACAAGGGAACAGGGGAACAGCCAGGTAACAAGATTGAGGTTATGTAACAGCCAACGACTGTGGTACTGAACTGGTTAAAGGTGGTACTGAACTGGTTAAAGGTGGTACTGAACTGGTTAAAGGTGGTACTGAACTGGTTAAAGGTGGTACTGAACTGGTTAAAGGTGATACTGAACTGGTTAAAAGGTGGTACTGAACTGATTAAAAGGAGAACAGGCCGTTTACAAGGACTAACTGAATGAGTAACGAATGGGAAAATAACaggtaattaaataaataaaccaaTTTAGTGTGAAGAACAGAACAGCAAATgtgatgttggggggggggggggggggggcagccagGTAACAAGGGTGAACAATGATGGTTGGATGAAGAGGTAATGAGCAGGAAAAGGGAAAAACTAAACTCCACAAGTACCGTCATCATGtgcaaattaactttaaaacagtCAAAATATTCAAATCAATGGCACAGGTCTGCATGAACAAAACAATATTAAAAAGTATGTGCATTAAACAGTAAATACCATTACTTTACCATATATTTCTTCCCtgactctcctccctcactctcctccctcacGCTCTCCTCACTCACGCTCTCCTCCCTCACGCTCTCCTCCCTCACGCTCTCCTCCCTCACGCTCTCCTCCCTCAcgctctcctccctcactctcctccctcactctcctccctcacgctctcctccctcacgctctcctccctcacgctctcctccctcacgctctcctcctcacgctctcttctctctgcgtGTCTTGCTAGTGTAGTGATCTAGTAGTGTCACTGTCTGGTGAGATCAATAAAGGCGCCTGTCAACAGGTACAAAATGAACACGTAAAGGAACTGGTCAAATAACCCCAGGAAGTGGAAAAcctttcaacaacaaaaataatcctCTACAACAGGCAGGTGTTGCACCCAATAACGAACATAACTTAGTGGTGTTAAGTTAGGGTGAAATGTatgtagggtagcctagtggttagagcgttggactagttaaccgaaaggttgcaagttcgaatccccgagctgacaaggtaaaaatctgtctttctgccccctgaacaaggcagtgttcctaggccgtcattgtgaaataagaatgtgttcttaactgacttgcctagttaaataaaaggttaaaaaaaaacaaattaaaaaaatgttatgtttcatgttttgtgtggaccccaggaagaataatggctgcttttgcaacagctactGAGGATCCTAATGAAATACCAAAATACCAGTTAATGTTTAAACAGTGTTAACTACGGTAAAACACTGGCAAACTATTTCAAATCTaaaacaatttttaaaaaacttCACCAAAATAGTCTCACTATTCAAGGACGACAGTTAAGAAATGTAATAATAAATGGTTTAGAATTTAGATTTCTTGATCACTAAAAAATGTCATCATCGACGACCGGGGGTTATTTGCGCGTTAAACTCTTACAGAATATCTTACAATTTGGACGGCTAAGGGCACTTAAAATACATTTCAGTCAAATTAAAATCTTATTTTAGAAGTTCGTCAAAAACTGTTCTTTATAGCGTATACAATACTAAAGGAGTTAATTAGAACCATTTCCCACCATGCAGTGTAACATCTCGGAAAGGTCCCAAATGGCCCTGGTAAAAAGCAGttcactacatatggaatagggtgtaatATTGGACACAACCCCAGGCTAGCTGACATTTCTTCCTGACAGAAAACGGGGATTGTGAAAaggtcagagagagaaacactgtgGAAGTGTTAGATCAATGCGAGTGACGGACACATTCTCTACTGAGGAGTCGTTGGTCCTCTAGCTGCTGGGAACATTTCCAGAACATTCTACTGGGAGGTAAAAACAATACAACTGGTCTAAAAAACTAAATAAAATGTTTATATAAATTACCTTCTTATCCAAATAATCATATTCCTGTTTGTATTTCTactccagagggagagagaagtaacGCTTGCATTAACACCTTTAATGCCACGGacgagcaacaacaaaaaaactattaTGTGGTAATTCAATCAATACGGAAAAAGGTATTCATTCAGGGATTAAAGCCAATATAAAAATAACATTCCTAAAATAAGCTTTGCTTGCGTAAATTTCTCCCGCATGTGAAACGGTCAATAGAGTAAGTGTACGTTGTGTAAGTTATGTGGTCTCTGTATCTACATTCATCAGCATTGTGTTTAGACGAGCCTCAGTGGATTTGTCATGCGTTGGCAGTCTCAGGTCCCTGATATCTTTACTGTGTTGCACAATAGACGGAGCAGAGTGAGAGAACTACAATTCCCACAGGGACCTAGTTTAAAATCACCTAACACTTCCTCTTCTCGCTTTCTTCACGTTGTTATTCATGATGCACCAGCCACCCTCCTCCCTGCTTACTCCCCTCTGCAGTGTCACAAGGATGCAGGCAGCGTCACAAGGATGCAGGCAGCGTCACAAGGATGCAGGCAGCGTCACAAGGATGCAGGCAGCGTCACAAGGATGCAGGcagcgtcccaaatgacaccccattACCTACggggggctctggtcaaatgtagtgcactatatagggaatagggtgcttctACAGTCTCCATGTCTTTTCTATGATGTTGACCTTCTGATCTCATTCCCTTATTTGatcactcatcatcatcatcatcatcactcacCAGCCCATTCTATTCTTCTGGACTCACAAACTCACACTTCTGTGGTGCTGCTTGACAAagctctcctgtctctctctccgtatcgcccccctcacctcctccaaTCTATCCTGCCTTGGAGTGGGGATGACAACGTCCCTCAGaactctctcctctgccctgggGTTCCCGTCTCGGATCTCAGCTATCAAggacctctccctctcctttcccatcAGGCTGCTCACGTCCCTCAcaactctctcctctgccctgggGTTCCCGTCTCGGTTCTCAGCTATCAAGGacatctccctctcctttcccatcAGGCTGCTCAcaactctctcctctgccctgggGTTCCCGTCTCGGTCTCTGTTCTCAGCCATAAAGGACTGGTCCCTCTCCCAGTCCTCTCCCATCAGGCTGCTCACGTCACTCAGATTCCCCAGGTGCTCCACCGAGTCACACTTCTCCAGATCCGAGGCGATGGTCTGGAGGCTGATGTCAGACATGGAGTCTgaccctgcctcccccctcttcctGTGACCCCagccctgctctctgtgtctctccaccCACTGCCTGGTCTTCTCTCCATCAGCCCAGTCCTTCTCATCCAAGCCTGCTCCTCCGCCACATGCTCCTCCAACCTGAACCCCGACCGCAGCTTTGACCTCAGCCTCCGCCCCCACTGGGGAGCTCCGCCCACCGCAGGCTATGGGGTGGGCCCTGGTGGCTCGGACACGCCCCCTCTGAGCATGGATCTGCTCGCTGATTTGCTCCAGGTTGCGCAGGGCGACGGAGTAGCGCATCTTCACCTTTGCGACACGTTCTTCCAGCTGCACCACATTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623684 lncRNA upstream 79128 8711625 ~ 8711973 (+) True G2293901
TU2623682 lncRNA upstream 83418 8705982 ~ 8707683 (+) True G2293900
TU2623665 lncRNA upstream 160416 8629556 ~ 8630685 (+) True G2293884
TU2623626 lncRNA upstream 217174 8572515 ~ 8573927 (+) True G2293853
TU2623604 lncRNA upstream 275435 8511906 ~ 8515666 (+) True G2293831
TU2623806 lncRNA downstream 52422 8847924 ~ 8848431 (+) True G2293988
TU2623819 lncRNA downstream 111059 8906561 ~ 8906828 (+) True G2294000
TU2623820 lncRNA downstream 111337 8906839 ~ 8907137 (+) True G2294001
TU2623768 lncRNA downstream 111983 8907485 ~ 8907781 (+) True LOC110489365
TU2623891 lncRNA downstream 226028 9021530 ~ 9021761 (+) True G2294046
XM_036971683.1 mRNA upstream 285101 8503624 ~ 8506000 (+) True tnfa
XM_036971670.1 mRNA upstream 370337 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_021559778.2 mRNA upstream 588741 8198664 ~ 8202360 (+) False LOC110487863
XM_036971314.1 mRNA upstream 871651 7897661 ~ 7919450 (+) False e2f3
XR_005041317.1 mRNA upstream 911525 7879139 ~ 7879576 (+) False LOC118946479
LOC118946524 mRNA downstream 31408 8826910 ~ 8833518 (+) True LOC118946524
XM_021559789.2 mRNA downstream 96137 8891639 ~ 8896196 (+) True LOC110487872
XM_036970929.1 mRNA downstream 111948 8907450 ~ 8934029 (+) False LOC110489365
XM_036970930.1 mRNA downstream 112293 8907795 ~ 8934029 (+) False LOC110489365
XM_021559790.2 mRNA downstream 138628 8934130 ~ 8942477 (+) False LOC110487875
TU2623594 other upstream 279360 8510872 ~ 8511741 (+) False G2293829
TU2623385 other upstream 440418 8350213 ~ 8350683 (+) True G2293677
TU2623152 other upstream 685092 8105628 ~ 8106009 (+) True G2293464
TU2623110 other upstream 712720 8075687 ~ 8078381 (+) False G2293430
TU2623755 other downstream 48511 8844013 ~ 8847252 (+) False G2293943
TU2623757 other downstream 48511 8844013 ~ 8847252 (+) True G2293943
TU2623927 other downstream 299290 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 539833 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1334614 10130116 ~ 10131651 (+) False G2294925

Expression Profile