RNA id: TU2623757


Basic Information

Item Value
RNA id TU2623757
length 2520
RNA type TUCP
GC content 0.47
exon number 2
gene id G2293943
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8844013 ~ 8847252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTACAACGTATTGAAGTTCTAAACACGTCAGGCAGAGTGGTTCTTACACATCACCATTCAGGACATATGAATCGATCTTCCTGACAATCAATCACCCCAGAACTAAGTACATGAATAAAAAGCACCCTTCACGTATCACCCAGTTACACCCAATCACGTAAATCAAGAAAACATGTAAAACAATCATGatcattgttgttttgttttcctcTTTCAACAAACACAACTGCAGCAGACCACCGTTTGAATGTCATGGAATTACAACCGACCATTCATTTTGAAAAAGGGGCTAAAGTATATggacgtcccaaatggcacccttttccctttatagtgcacttcttttgatcaGGGCACCATAGGGTTCTGGACAAAGgtcgtgcactatatagggaatagggtgccatttgatatgAGCACAACATAATGTCACATACAGGTGTTAAATTGGCTCGCTGCAAGGCAATGTATGAACCTCTGATCATCTCTTTATAAAACCATTTACAAGAGATAAATAAATCATTCCCAAAATAGTATTTCCCCCTCCAAAAAAAAATCATGGTActttttttttccattttaaaGAATAAATCAGATTATATATTTATGATAAAAGTTTAATACCAGTCTAACTAATATTTCGACCTCATTCATTCACTTTGAGTGAGTGGAATACTGCAAGTTCTTTTTAAAGTAGACATCTGAGAATAGAATGTAGACAGAGGCTGTCCTAAATGGGTccctctagtgcactactttatactacagccctatggTTCCTAGTCAAAAGGTAGTGCAGTAAACAGGGAGCCATTTGGATCTTTTAAGATCTGGTGACACAGAAAAAAAAACCCCACAAAAAGCAAGTCTCTGAGGTCTCCAAATCCACGTAATCAACCTTTAGGTTTAAGACATCACGTTGGAGCAAACCGTAAACCACGTGTCAAATTCATttcacggagggccgagtgtctgcgggttttcactCCTCCTTTGTACTccattgatgaattaaggtcactgattagtaaggaactcccctcacccggtcgtctaggtctcagtaaggaactcccctcacctggttgtctaggtctcagtaaggaactcccctcacctggttgtctaggtctcagtaaggaactcccctcacctggttgtctaggtctcagtaaggaactcccctcacctggttgtctaggtctcagtaaggaactcccctcacctggtcgtctaggtctcagtaaggaactcccctcacctggtcgtctaggtctcagtaaggaactcccctcacctggtcgtctaggtctcagtaaggaactcccctcacctggtcgtctaggtctcagtaaggaactcccctcacctggtcgtctaggtctcagtaaggaactcccctcacctggttgtctaggtctcagtaaggaactcccctcacctggtcgtctaggtctcagtaaggaactcccctcacctggttgtctaggtcttaattaaaataataaaaaaacagacactaagccctccatggaatgagttcgACACCCCCACCATAAAGCATTCCAGCTCTAGCAGGAGAACAACCAAGCATTAAATGGTTCGTAATTTCTGTGAGACGTGCTGTGGTTTCACTGCCTGGGTGTTGCCCTGTGTCACACTGTGCCTCACTCTATCACATATCCCTTCCCACACCTGTCTGTTTAGCTTCCGCTCCTTCATGTTaccttgtttttgttttctttggTTAGAGAAGGTGTTCCTCTCTGTCGAGTCTGTCTTCGATAACATTCACAATAAGTCCTGTTCAAACCTCTCAGCTCCAGCTGACGTCGTACTTTGTCCATCCCTCAGGTGGGGTCAAGAAGACCCGTCGTCCACGGGATAGGAAGCTAACCACACCCCTGTAACCCGCACGGGGAACCCCCGATTTCAAGTCATCCATCACCCCTAAGTTACGGGCCAGAACCTTAAAATTGTCCCGGCTGGAATATTGCACCCGGTACGGACCAGTTCCCGTCAAACCACCCCCTTGTTGTAGCTCCTCCACCTTAATCAGAGGGGCGCTGTAAACCTGCTTCACAAAGTTGACGTCAAAGTTCTCCTTCATCAAGTAAGACAGATCCTGTTTGGTGAAAGGCACAAAGTCAGTGTTGAGTTTAATATAACGCAGATACTGGTCAAAGAACTGACCCAAGCTGACACCCTTGCGTCCGAAGGTCATAGTTCTGGAGATCTCTGGGCGGATGCAGGAGCGCTCTTTACGCTGCTCGGGGTGACGCATCCAGTCGTCCCAGAAGGCTGTGGGCCACTTGGGTTCTAGTTCTGCCCAGATGTCCTTCAGCAGCATCCAGCCCAGCCCAGGGAAGAAGTCTGTCCTGTAGAGGAGGTCCGCCTTCCCAGGGTCCACCAGTCCCTCCCGGCCATTGTCGTTCCAGGCAGACGCACACCACAGGGTGGGGTCAGAGGTCAAGATGGGGTGAAGGGCACGGAAGTACTCAAAGAAGTCTGGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623684 lncRNA upstream 132040 8711625 ~ 8711973 (+) True G2293901
TU2623682 lncRNA upstream 136330 8705982 ~ 8707683 (+) True G2293900
TU2623665 lncRNA upstream 213328 8629556 ~ 8630685 (+) True G2293884
TU2623626 lncRNA upstream 270086 8572515 ~ 8573927 (+) True G2293853
TU2623604 lncRNA upstream 328347 8511906 ~ 8515666 (+) True G2293831
TU2623806 lncRNA downstream 672 8847924 ~ 8848431 (+) True G2293988
TU2623819 lncRNA downstream 59309 8906561 ~ 8906828 (+) True G2294000
TU2623820 lncRNA downstream 59587 8906839 ~ 8907137 (+) True G2294001
TU2623768 lncRNA downstream 60233 8907485 ~ 8907781 (+) True LOC110489365
TU2623891 lncRNA downstream 174278 9021530 ~ 9021761 (+) True G2294046
LOC118946524 mRNA upstream 10495 8826910 ~ 8833518 (+) True LOC118946524
XM_036971683.1 mRNA upstream 338013 8503624 ~ 8506000 (+) True tnfa
XM_036971670.1 mRNA upstream 423249 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_021559778.2 mRNA upstream 641653 8198664 ~ 8202360 (+) False LOC110487863
XM_036971314.1 mRNA upstream 924563 7897661 ~ 7919450 (+) False e2f3
XM_021559789.2 mRNA downstream 44387 8891639 ~ 8896196 (+) True LOC110487872
XM_036970929.1 mRNA downstream 60198 8907450 ~ 8934029 (+) False LOC110489365
XM_036970930.1 mRNA downstream 60543 8907795 ~ 8934029 (+) False LOC110489365
XM_021559790.2 mRNA downstream 86878 8934130 ~ 8942477 (+) False LOC110487875
XM_021559791.2 mRNA downstream 86879 8934131 ~ 8942477 (+) False LOC110487875
TU2623733 other upstream 48511 8791101 ~ 8795502 (+) False G2293942
TU2623927 other downstream 247540 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 488083 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1282864 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1471600 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1667702 10514954 ~ 10521307 (+) True LOC110487904

Expression Profile