RNA id: TU2623820


Basic Information

Item Value
RNA id TU2623820
length 299
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2294001
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8906839 ~ 8907137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaaaggctcgAATCcccaaggtataaatctgtcgttctgtccctgaacaaggcagttaacccactgttcctaggccgtcattgtgaataagaattgtCTTAAAACTCTCTGGGATAGGCGTCCTACTAGAGggacaaattcaaataaataatcataaaaatgatggatattaaacatttaggtacatacaagtgtcttatattggttaaaaacttaaattcttgttaatctaactgcactgtccgatatacagtagctattacagctggggcccacatcaaaatatttttccaccggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623819 lncRNA upstream 11 8906561 ~ 8906828 (+) True G2294000
TU2623750 lncRNA upstream 30375 8791101 ~ 8876464 (+) True G2293942
TU2623806 lncRNA upstream 58408 8847924 ~ 8848431 (+) True G2293988
TU2623684 lncRNA upstream 194866 8711625 ~ 8711973 (+) True G2293901
TU2623682 lncRNA upstream 199156 8705982 ~ 8707683 (+) True G2293900
TU2623768 lncRNA downstream 348 8907485 ~ 8907781 (+) True LOC110489365
TU2623891 lncRNA downstream 114393 9021530 ~ 9021761 (+) True G2294046
TU2623896 lncRNA downstream 120647 9027784 ~ 9028128 (+) True G2294051
TU2623903 lncRNA downstream 131059 9038196 ~ 9038405 (+) True G2294058
TU2623884 lncRNA downstream 139483 9046620 ~ 9046966 (+) False LOC110489366
XM_021559789.2 mRNA upstream 10643 8891639 ~ 8896196 (+) True LOC110487872
LOC118946524 mRNA upstream 73321 8826910 ~ 8833518 (+) True LOC118946524
XM_036971683.1 mRNA upstream 400839 8503624 ~ 8506000 (+) True tnfa
XM_036971670.1 mRNA upstream 486075 8410404 ~ 8420764 (+) True si:ch211-152p11.4
XM_021559778.2 mRNA upstream 704479 8198664 ~ 8202360 (+) False LOC110487863
XM_036970929.1 mRNA downstream 313 8907450 ~ 8934029 (+) False LOC110489365
XM_036970930.1 mRNA downstream 658 8907795 ~ 8934029 (+) False LOC110489365
XM_021559790.2 mRNA downstream 26993 8934130 ~ 8942477 (+) False LOC110487875
XM_021559791.2 mRNA downstream 26994 8934131 ~ 8942477 (+) False LOC110487875
XM_021559792.2 mRNA downstream 27007 8934144 ~ 8942477 (+) False LOC110487875
TU2623755 other upstream 59587 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 59587 8844013 ~ 8847252 (+) True G2293943
TU2623741 other upstream 111337 8791101 ~ 8795502 (+) False G2293942
TU2623927 other downstream 187655 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 428198 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1222979 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1411715 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1607817 10514954 ~ 10521307 (+) True LOC110487904

Expression Profile