RNA id: TU2623891


Basic Information

Item Value
RNA id TU2623891
length 232
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2294046
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9021530 ~ 9021761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagggaatagggccctggtcaaaagtagtgcactatactgtatagggaatagggctctggtcaaaagtagtgcactatactgtatagggaatagggctctggtcaaaagtagtgcactatactgtatagggaatagggctctggtcaaaagtagtgcactatatatggggATAGTGTGCCATTTTGGTATTCAATCTATGAGCAGTTATCTGTGGGTGAGTATTAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2623768 lncRNA upstream 113749 8907485 ~ 8907781 (+) True LOC110489365
TU2623820 lncRNA upstream 114393 8906839 ~ 8907137 (+) True G2294001
TU2623819 lncRNA upstream 114702 8906561 ~ 8906828 (+) True G2294000
TU2623750 lncRNA upstream 145066 8791101 ~ 8876464 (+) True G2293942
TU2623806 lncRNA upstream 173099 8847924 ~ 8848431 (+) True G2293988
TU2623896 lncRNA downstream 6023 9027784 ~ 9028128 (+) True G2294051
TU2623903 lncRNA downstream 16435 9038196 ~ 9038405 (+) True G2294058
TU2623884 lncRNA downstream 24859 9046620 ~ 9046966 (+) False LOC110489366
TU2623907 lncRNA downstream 25719 9047480 ~ 9047735 (+) True G2294062
TU2623926 lncRNA downstream 68664 9090425 ~ 9091650 (+) True G2294080
XM_036971530.1 mRNA upstream 2061 9005647 ~ 9019469 (+) False LOC110487879
XM_036971528.1 mRNA upstream 2061 9012028 ~ 9019469 (+) False LOC110487879
XM_036971529.1 mRNA upstream 2061 9012043 ~ 9019469 (+) True LOC110487879
XM_036970689.1 mRNA upstream 66580 8942998 ~ 8954950 (+) True stx12
XM_021559790.2 mRNA upstream 79053 8934130 ~ 8942477 (+) False LOC110487875
XM_036970783.1 mRNA downstream 24835 9046596 ~ 9162496 (+) False LOC110489366
XM_036970784.1 mRNA downstream 24835 9046596 ~ 9162496 (+) False LOC110489366
XM_036970785.1 mRNA downstream 24835 9046596 ~ 9162496 (+) False LOC110489366
XM_036970787.1 mRNA downstream 24835 9046596 ~ 9162496 (+) False LOC110489366
XM_036970788.1 mRNA downstream 24835 9046596 ~ 9162496 (+) False LOC110489366
TU2623755 other upstream 174278 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 174278 8844013 ~ 8847252 (+) True G2293943
TU2623741 other upstream 226028 8791101 ~ 8795502 (+) False G2293942
TU2623927 other downstream 73031 9094792 ~ 9103186 (+) True G2294081
TU2624382 other downstream 313574 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 1108355 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 1297091 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1493193 10514954 ~ 10521307 (+) True LOC110487904

Expression Profile