RNA id: TU2624377



Basic Information


Item Value
RNA id TU2624377
length 300
lncRNA type intronic
GC content 0.56
exon number 2
gene id G2294449
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9330259 ~ 9330708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtagggggaggagcagcgtgaggtaatacagtagggggaggagcagcgtgaggtaatacagtagggggaggtgcagcatgaggtaatacagtaggtgggggagcagcatgaggtaatacagtagggggaggagcagcgtgaggtaatacagtaggggaggagcagcgtgaggtaatacagtaggggaggagcagcgtgaggtaatacagtagggggaggagcagcgtgaggtaatacagtagggggaggagcagcgtgaggtaatacagtagggggaggagcagcgtgaggtaatacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2624375 lncRNA upstream 1605 9327450 ~ 9328654 (+) True G2294448
TU2624348 lncRNA upstream 62207 9266756 ~ 9268052 (+) True G2294421
TU2624338 lncRNA upstream 78507 9251547 ~ 9251752 (+) True G2294412
TU2624336 lncRNA upstream 78974 9251070 ~ 9251285 (+) True G2294410
TU2623863 lncRNA upstream 167318 9161386 ~ 9162941 (+) False LOC110489366
TU2624388 lncRNA downstream 14053 9344761 ~ 9345078 (+) True G2294457
TU2624389 lncRNA downstream 16110 9346818 ~ 9347314 (+) True G2294458
TU2624390 lncRNA downstream 48201 9378909 ~ 9379108 (+) True trnap-agg-172
TU2624393 lncRNA downstream 50146 9380854 ~ 9381293 (+) True G2294462
TU2624403 lncRNA downstream 79134 9409842 ~ 9410070 (+) True G2294472
XM_036971827.1 mRNA upstream 5257 9324340 ~ 9325002 (+) True LOC118946539
XM_036970790.1 mRNA upstream 167763 9046596 ~ 9162496 (+) False LOC110489366
trnap-agg-161 mRNA downstream 23109 9353817 ~ 9353888 (+) True trnap-agg-161
trnap-agg-163 mRNA downstream 26383 9357091 ~ 9357162 (+) True trnap-agg-163
trnap-agg-165 mRNA downstream 32341 9363049 ~ 9363120 (+) True trnap-agg-165
trnap-agg-167 mRNA downstream 35615 9366323 ~ 9366394 (+) True trnap-agg-167
trnap-agg-170 mRNA downstream 44837 9375545 ~ 9375616 (+) True trnap-agg-170
TU2623927 other upstream 227073 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 483007 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 483007 8844013 ~ 8847252 (+) True G2293943
TU2623742 other upstream 534757 8791101 ~ 8795502 (+) False G2293942
TU2624382 other downstream 4627 9335335 ~ 9337755 (+) True G2294452
TU2624966 other downstream 799408 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 988144 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1184246 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1954785 11285493 ~ 11290303 (+) True G2296150

Expression Profile