RNA id: TU2624393


Basic Information

Item Value
RNA id TU2624393
length 440
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2294462
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9380854 ~ 9381293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatattgtattctatactatctattgcatcttgcctgtgtcgctctgtcattgctcatccatgtatttatatattcttattccattcctttacttagatctgtgtgtattatgtagttgttgtggaattgtaagacattacttgttagatattgctgcacatgtcggaactagaagcacaagcatttcgctacactcgcaataacatctgctaacatctGCTATTTGAAGTAACACTCAAGAGTACGTTGTCTCGACACAAACAGCACCATATTACCAagtaacaaatcaaatcacatttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttacgacaatgcagtaataaccaacgagtaatctaacctaacaattccaaaactactaccttatacacacaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2624390 lncRNA upstream 1746 9378909 ~ 9379108 (+) True trnap-agg-172
TU2624389 lncRNA upstream 33540 9346818 ~ 9347314 (+) True G2294458
TU2624388 lncRNA upstream 35776 9344761 ~ 9345078 (+) True G2294457
TU2624377 lncRNA upstream 50146 9330259 ~ 9330708 (+) True G2294449
TU2624375 lncRNA upstream 52200 9327450 ~ 9328654 (+) True G2294448
TU2624403 lncRNA downstream 28549 9409842 ~ 9410070 (+) True G2294472
TU2624367 lncRNA downstream 52755 9434048 ~ 9435450 (+) True G2294440
TU2624410 lncRNA downstream 55153 9436446 ~ 9436764 (+) True G2294479
TU2624411 lncRNA downstream 56137 9437430 ~ 9438504 (+) True G2294480
TU2624415 lncRNA downstream 75615 9456908 ~ 9457147 (+) True G2294484
trnap-agg-172 mRNA upstream 1891 9378892 ~ 9378963 (+) False trnap-agg-172
trnap-agg-170 mRNA upstream 5238 9375545 ~ 9375616 (+) True trnap-agg-170
trnap-agg-167 mRNA upstream 14460 9366323 ~ 9366394 (+) True trnap-agg-167
trnap-agg-165 mRNA upstream 17734 9363049 ~ 9363120 (+) True trnap-agg-165
trnap-agg-163 mRNA upstream 23692 9357091 ~ 9357162 (+) True trnap-agg-163
XM_021559799.2 mRNA downstream 1434 9382727 ~ 9386344 (+) True LOC110487882
XM_036971569.1 mRNA downstream 29020 9410313 ~ 9429688 (+) True LOC110487883
XM_036971409.1 mRNA downstream 108501 9489794 ~ 9532662 (+) True LOC110489367
NM_001124344.1 mRNA downstream 186759 9568052 ~ 9573780 (+) True cck-t
XM_036971715.1 mRNA downstream 240734 9622027 ~ 9624695 (+) True LOC110487884
TU2624382 other upstream 43099 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 277668 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 533602 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 533602 8844013 ~ 8847252 (+) True G2293943
TU2623747 other upstream 585352 8791101 ~ 8795502 (+) False G2293942
TU2624966 other downstream 748823 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 937559 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 1133661 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1904200 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 2182254 11563547 ~ 11564590 (+) True G2296278

Expression Profile