RNA id: TU2624921


Basic Information

Item Value
RNA id TU2624921
length 331
lncRNA type intronic
GC content 0.38
exon number 3
gene id G2294893
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10018654 ~ 10019504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaacaacagtaaaaagacatttgaaaaaagagtagcgaGGCcacatacagacacctgttagtcaggctgattgaggtagtatgtacatgtaggtatatacagacacctgttagtcaggcttattgaggtagtatgtacatgtagatatatacagacacctgttagtcaggcttattgaggtagtatgtacatgtaggtatatacagacacctgttagtcaggcttattgaggtagtatgtacatgtaggtatatacagacacctgttagtcaggcttattgaggtagtatgtacatgtgggtatcgttaaagtgactatgcatatatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2624917 lncRNA upstream 7242 10011115 ~ 10011412 (+) True G2294889
TU2624916 lncRNA upstream 11539 10006890 ~ 10007115 (+) True G2294888
TU2624915 lncRNA upstream 11907 10006541 ~ 10006747 (+) True G2294887
TU2624837 lncRNA upstream 30361 9983160 ~ 9988293 (+) True G2294813
TU2624833 lncRNA upstream 36143 9980412 ~ 9982511 (+) True G2294810
TU2624941 lncRNA downstream 66514 10086018 ~ 10094011 (+) False G2294905
TU2624942 lncRNA downstream 70245 10089749 ~ 10094011 (+) True G2294905
TU2624960 lncRNA downstream 104120 10123624 ~ 10123842 (+) True G2294922
TU2624961 lncRNA downstream 104551 10124055 ~ 10124316 (+) True G2294923
TU2624964 lncRNA downstream 111329 10130833 ~ 10131651 (+) True G2294925
XM_036971715.1 mRNA upstream 393959 9622027 ~ 9624695 (+) True LOC110487884
NM_001124344.1 mRNA upstream 444874 9568052 ~ 9573780 (+) True cck-t
XM_036971409.1 mRNA upstream 485992 9489794 ~ 9532662 (+) True LOC110489367
XM_036971569.1 mRNA upstream 588966 9410313 ~ 9429688 (+) True LOC110487883
XM_021559799.2 mRNA upstream 632310 9382727 ~ 9386344 (+) True LOC110487882
XM_021559811.2 mRNA downstream 29692 10049196 ~ 10064026 (+) False LOC110487893
XM_021559812.2 mRNA downstream 29693 10049197 ~ 10064026 (+) True LOC110487893
XR_005041414.1 mRNA downstream 71799 10091303 ~ 10092528 (+) True LOC118946535
XM_036971831.1 mRNA downstream 302529 10322033 ~ 10322722 (+) False LOC118946540
XM_036970862.1 mRNA downstream 384868 10404372 ~ 10427604 (+) True LOC110513484
TU2624382 other upstream 680899 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 915468 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 1171402 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 1171402 8844013 ~ 8847252 (+) True G2293943
TU2623747 other upstream 1223152 8791101 ~ 8795502 (+) False G2293942
TU2624966 other downstream 110612 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 299348 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 495450 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1265989 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 1544043 11563547 ~ 11564590 (+) True G2296278

Expression Profile