RNA id: TU2624961


Basic Information

Item Value
RNA id TU2624961
length 262
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2294923
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10124055 ~ 10124316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgaaaattaaatacagaaatatctaatttacataggtACTCACTCATAAGTGCTCTGTGAAGTTGGCTGtgattttcaggtctttccatagatttATGACAATTTAAGTCAATACTGTAACTAGGCCAATCAGGAGCAGCATTCAATATCGTCTCGGTAACCAACTCCAGTGTACATTTGTGTTTTTGTCCTACCGAacagtgaatttgtctcccagtgtctggtggaaagcagattttgcctgtgcttagctctattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2624960 lncRNA upstream 213 10123624 ~ 10123842 (+) True G2294922
TU2624941 lncRNA upstream 30044 10086018 ~ 10094011 (+) False G2294905
TU2624942 lncRNA upstream 30044 10089749 ~ 10094011 (+) True G2294905
TU2624921 lncRNA upstream 104551 10018654 ~ 10019504 (+) False G2294893
TU2624923 lncRNA upstream 104551 10018654 ~ 10019504 (+) True G2294893
TU2624964 lncRNA downstream 6517 10130833 ~ 10131651 (+) True G2294925
TU2624974 lncRNA downstream 13704 10138020 ~ 10157964 (+) False G2294931
TU2624975 lncRNA downstream 13704 10138020 ~ 10167492 (+) False G2294931
TU2624976 lncRNA downstream 13704 10138020 ~ 10142332 (+) False G2294931
TU2624977 lncRNA downstream 13704 10138020 ~ 10157964 (+) False G2294931
XR_005041414.1 mRNA upstream 31527 10091303 ~ 10092528 (+) True LOC118946535
XM_021559811.2 mRNA upstream 60029 10049196 ~ 10064026 (+) False LOC110487893
XM_021559812.2 mRNA upstream 60029 10049197 ~ 10064026 (+) True LOC110487893
XM_036971715.1 mRNA upstream 499360 9622027 ~ 9624695 (+) True LOC110487884
NM_001124344.1 mRNA upstream 550275 9568052 ~ 9573780 (+) True cck-t
XM_036971831.1 mRNA downstream 197717 10322033 ~ 10322722 (+) False LOC118946540
XM_036970862.1 mRNA downstream 280056 10404372 ~ 10427604 (+) True LOC110513484
XM_021562146.2 mRNA downstream 313361 10437677 ~ 10441669 (+) False si:ch211-199g17.9
XM_036971832.1 mRNA downstream 342049 10466365 ~ 10490055 (+) True LOC110489372
XM_036971644.1 mRNA downstream 382777 10507093 ~ 10509282 (+) True LOC110489373
TU2624382 other upstream 786300 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1020869 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 1276803 8844013 ~ 8847252 (+) False G2293943
TU2623757 other upstream 1276803 8844013 ~ 8847252 (+) True G2293943
TU2623747 other upstream 1328553 8791101 ~ 8795502 (+) False G2293942
TU2624966 other downstream 5800 10130116 ~ 10131651 (+) False G2294925
TU2625098 other downstream 194536 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 390638 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1161177 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 1439231 11563547 ~ 11564590 (+) True G2296278

Expression Profile