RNA id: TU2624979


Basic Information

Item Value
RNA id TU2624979
length 675
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2294931
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10138020 ~ 10167492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactatctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2624964 lncRNA upstream 6369 10130833 ~ 10131651 (+) True G2294925
TU2624961 lncRNA upstream 13704 10124055 ~ 10124316 (+) True G2294923
TU2624960 lncRNA upstream 14178 10123624 ~ 10123842 (+) True G2294922
TU2624941 lncRNA upstream 44009 10086018 ~ 10094011 (+) False G2294905
TU2624994 lncRNA downstream 12572 10170536 ~ 10185915 (+) False G2294941
TU2624992 lncRNA downstream 21198 10179162 ~ 10183927 (+) False G2294941
TU2624991 lncRNA downstream 25591 10183555 ~ 10183927 (+) True G2294941
TU2625007 lncRNA downstream 44816 10202780 ~ 10202989 (+) True G2294951
TU2625019 lncRNA downstream 55243 10213207 ~ 10221968 (+) False G2294958
XR_005041414.1 mRNA upstream 45492 10091303 ~ 10092528 (+) True LOC118946535
XM_021559811.2 mRNA upstream 73994 10049196 ~ 10064026 (+) False LOC110487893
XM_021559812.2 mRNA upstream 73994 10049197 ~ 10064026 (+) True LOC110487893
XM_036971715.1 mRNA upstream 513325 9622027 ~ 9624695 (+) True LOC110487884
NM_001124344.1 mRNA upstream 564240 9568052 ~ 9573780 (+) True cck-t
XM_036971831.1 mRNA downstream 164069 10322033 ~ 10322722 (+) False LOC118946540
XM_036970862.1 mRNA downstream 246408 10404372 ~ 10427604 (+) True LOC110513484
XM_021562146.2 mRNA downstream 279713 10437677 ~ 10441669 (+) False si:ch211-199g17.9
XM_036971832.1 mRNA downstream 308401 10466365 ~ 10490055 (+) True LOC110489372
XM_036971644.1 mRNA downstream 349129 10507093 ~ 10509282 (+) True LOC110489373
TU2624966 other upstream 6369 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 800265 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1034834 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 1290768 8844013 ~ 8847252 (+) False G2293943
TU2625098 other downstream 160888 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 356990 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1127529 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 1405583 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1748743 11906707 ~ 11908666 (+) False LOC110487932

Expression Profile