RNA id: TU2625023


Basic Information

Item Value
RNA id TU2625023
length 1329
lncRNA type antisense_over
GC content 0.54
exon number 10
gene id G2294958
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10213207 ~ 10226042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtaccatcaGTTTGCTGGTCTGATTCGTCCAATGAAGTATCTTTGACGTTGTGTTTAAAGGGGGAGTCTGTAAAGGGGTCTCGGGACCCccggggagaagaggagagcagggggGTGTTCAGAAGAGAAGTCTTGTTGTCCAGAGCAGTGCGGACTCCATCCACCTGGTCAGCACCACCacccgttTCGTTCATGTCTTCCTGACTGCGGACGGAGAAGTTCTGGATGGCCTCTGTAACTCCTCTCAGACTACTGTAGATGTCGTCCGAGTTCATGTTCTCTGTGTCGTAGTCAAACGCACCGAGTGTGGATGTGTTCAGTGATGTGTTggtaggagaggtgagggggctgGACCAGCTGGCAGGAGAGCGGGGGGTGTGGCGTGTCATGGGGCTTCCCATTGGGGCCTGTGCAGTGTTGCCGGTGTTCCTCAGGTGGTTCTGTAGCAGTTTGGTGGCTCCGTCCTGGAAGGTCTTGGGCAGGGCTGCCAGCAGCATGGTGAACTCTGGAGTGTTCAACTGGAACAAGGAGATCAGTACCAACTGGGCCGCcttCCTGACGTCAGAGCTCTTGGGCTCTGTGGTCCAGGTGATGATGCGAGACACAGCCAGGCGCGTCTCACTGGAGTTCACAAAGTCCTGAGGATCCATCTGCAGGGTCAAGGTCTCAATGTACTTCAGAACAGCCACcttcacCTTGAGGTTTGGTGTCTGAGTCTGGTCCACAGTGAACCTCATGAGGATGGTGAACTGGAGGTCGTTGGGGAAAGACTCTCGTGTGATGTCCAGTGCTCTCTGGACCTTGGCCTGGACAGACCCCAGCAGGTCAGCTCCCATCTTCTTCAGCAGCTGGGTGAGCAGGACGAACAGCCAGTCCTGCAGGTCTTCTCTGTGCACCAGGACAAAGTCCACTAGGGTCTCCAAGAACATACTGAACACCTTcttactgtgggggTCTGCAAACATCCTGGTGAAAATCTCACACAACCTCTTCAGCTCCACACGactgtagagacacacacacacacacacacacacaggtgaataCAGCTGTGGTAGCATGTATTGCATCGGATAAACTTTTTCTCTCGACTGCATTGTGATAGGCTGCCAGGTGAAACCCTGCTTTGTGATAGGCTGCCAGGTGAAACCCTGCTTTGTGATAGGCTGACCTGAGGGTGCGTTGATTCTTCAGTAGAGCCTGTAGACCCAGAagcccctccttcctctccgacCAGTTGGCACTGGCACAGCGGTTCAACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2625007 lncRNA upstream 10218 10202780 ~ 10202989 (+) True G2294951
TU2624994 lncRNA upstream 27292 10170536 ~ 10185915 (+) False G2294941
TU2624992 lncRNA upstream 29280 10179162 ~ 10183927 (+) False G2294941
TU2624991 lncRNA upstream 29280 10183555 ~ 10183927 (+) True G2294941
TU2624980 lncRNA upstream 70670 10138020 ~ 10142537 (+) True G2294931
TU2625033 lncRNA downstream 3792 10229834 ~ 10250320 (+) True G2294962
TU2625035 lncRNA downstream 7685 10233727 ~ 10234343 (+) True G2294964
TU2625041 lncRNA downstream 15552 10241594 ~ 10242212 (+) True G2294970
TU2625064 lncRNA downstream 53486 10279528 ~ 10279900 (+) True G2294991
TU2625071 lncRNA downstream 78987 10305029 ~ 10306296 (+) False G2294996
XR_005041414.1 mRNA upstream 120679 10091303 ~ 10092528 (+) True LOC118946535
XM_021559811.2 mRNA upstream 149181 10049196 ~ 10064026 (+) False LOC110487893
XM_021559812.2 mRNA upstream 149181 10049197 ~ 10064026 (+) True LOC110487893
XM_036971715.1 mRNA upstream 588512 9622027 ~ 9624695 (+) True LOC110487884
NM_001124344.1 mRNA upstream 639427 9568052 ~ 9573780 (+) True cck-t
XM_036971831.1 mRNA downstream 95991 10322033 ~ 10322722 (+) False LOC118946540
XM_036970862.1 mRNA downstream 178330 10404372 ~ 10427604 (+) True LOC110513484
XM_021562146.2 mRNA downstream 211635 10437677 ~ 10441669 (+) False si:ch211-199g17.9
XM_036971832.1 mRNA downstream 240323 10466365 ~ 10490055 (+) True LOC110489372
XM_036971644.1 mRNA downstream 281051 10507093 ~ 10509282 (+) True LOC110489373
TU2624966 other upstream 81556 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 875452 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1110021 9094792 ~ 9103186 (+) True G2294081
TU2623755 other upstream 1365955 8844013 ~ 8847252 (+) False G2293943
TU2625098 other downstream 92810 10318852 ~ 10323588 (+) True LOC118946540
TU2625227 other downstream 288912 10514954 ~ 10521307 (+) True LOC110487904
TU2626619 other downstream 1059451 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 1337505 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1680665 11906707 ~ 11908666 (+) False LOC110487932

Expression Profile