RNA id: TCONS_00061711


Basic Information

Item Value
RNA id TCONS_00061711
length 2230
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_030145
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28916519 ~ 28918961 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcaaaacataacaataaaataagtCACAAAAGGATTTGAGTAGCATACAATTAAAAAGGTTAAGATGCAGTATAGTACCAAGTGcttgtaactaataaataaaagaaaatatattcaGTTACATCCAAGTTGAAGTACTTGTCATTTCATAGATAAAACTGCACTTAAGAAAATCTCAAACAGCAAGGAGGAAACCTTGTGGACAGATGCATCGAAGACAACTATTTGCACAACAAACATTTCAATTTGAAATACAAAGATCTAATATTAGTATCTGGTTTTCTGTCAGTGGCGCTGTACTAACATGAATATGAATTAAATCGACCTacggtattaaaaaaaaaaaaaaaaaaaaaaaaaaactcacctgtCTTAAATAAAATGACACGCATCTCCACAAAGACCCACAACCCTCTGCAGCACAGTATCCTCAGCATTGACTAAAACTACTACAGTGCACATGCAACCCAGATATTTGATACGGATTTGATAAAGCaattacacataaaaataaaaaataataataataaaaatgaaaagctcAACAGTGGAAAAGCCACCATTTGGAAAATCACTTGAATTCATTTGTACGGTTTTGGAACTGGGATTAAAATGATGCACTCTTTACCAGTTAAACCACAGCATCAGAATATCTTCTGTGCAGAAAACTGACATTTCCTTATGCCATTTTCAGCAACAACAAAAATTGCTTAGGCATTAAAcaaacttacataaaaaaaaaaaaaaaaccttatgaaAAAATTAAAGTCAGTGTCTTCAGTTTGAATTCTGGGCGAGGCAGATGATTTTgatcaataaaaacaaatctgaTGGAACAACATAGTTTAAATAAGGCAACATATGCTATTAACATCGGGCAGAATGTGTCTGCTTTACGTCATGATTTTCAGCACACTCAGAAATGATTGAGAATCCTAATAGTGTTGGATTTCGTATTTATGATTAGAAAGACATTTTGACCTACTGTAAGACGTGTATATAATCGAGTCCAGCTCTGAGtgacgtgattttttttttctaagtgcAAAAATTGTGACAGCGTGACAAGAACAAAAATAGACACTACAATAGACACTAAATAATGTCTATACAGTCAGAAATGTGAGACTATAGTGAAAATAAAACTctcttttaaagggatagatgATCAATTACCCTGCACTTTTCCAAACATGGATcgtttcttttttatgttgaacataaaacaatatattttaaagaacgtTGAATACCAtgtcaaacattcttcaaaacatcttttttttaatgttaacacaaataagaaatgtataaatggtttggaactacttgtggttgagtaaacagtgagttaATAGTCATacctgggtgaactatccctttaagagcaaTGTGTAATGCATTTCCTCAATGTTTGCAGGTATACAAACACATTAACTGAATCGTCTTTTCACTTGTGATCCACGTGTGCACTTTCTCCCTTCCCAGTGTCCTCTCCTGTCTCAGCGTCATTACATTCCTGCTTTTCCATTGGATGCTCCTCTACTTTTACCTCATTAGCGGGCGACTGGACTCCACTGTCGTCCTGCTGTAACGAACAGATGGGCTTTTCCGTGTGGGAGTCTTGATTACCCTCCGTAATGTGATTTTCCTGTTGATCTGATGCCGTCACGGCCTCCACTTCCCTAACGGCTGAATCCTCTGAACCTAAAGGTGGCTTCTCCTCAACCGCATTTCTGTTCACATCCTCTTTGGTTCCGTTGGGCACTTGCTTCTCCGATTTTTGGGATAATGAGGTGTCTGAATGTACCTCGGTCTCCTCCTCTGGAATTTTGCCCACGTTGGGCACTTCCAGACATGACTCGTGGGGCAGCACTGATGCGGTGCCCTCTAACTGGATCATGGAGACCACCTGCTTCATCCTGCGCCTCTTCTGAGCTTCGGGATCTCCAGCGTTTTCTCCACCTGCCTCCTCCTGGCCTCCTCCATACTCCTCAGCCCAGTCGATGGCAGGGTTTTCTGCCAGGAGGTGAAGGTTTGGGTCGCTGTTGGTCAAAACAATGCTGTCTCGGTATAGGTTGTGTCTCCTCTGGACTGCTGCTTCCTTCACCGCTGGAGACATAAGAGGAAATGTTGATCAGACCACACTGATGGCATGAATGCATTGTGGAATCTCTAATAACATTTattccaaatttcaaataaaaactatTGTCATTTAGAGAATATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058935 lncRNA upstream 142618 28773214 ~ 28773901 (+) True XLOC_030138
TCONS_00061710 lncRNA upstream 354382 28561003 ~ 28562137 (+) True XLOC_030137
TCONS_00061437 lncRNA upstream 413342 28497934 ~ 28503177 (+) False XLOC_030136
TCONS_00058932 lncRNA upstream 413342 28497934 ~ 28503177 (+) True XLOC_030136
TCONS_00061709 lncRNA upstream 517695 28393348 ~ 28398824 (+) False XLOC_030135
TCONS_00061712 lncRNA downstream 322833 29241794 ~ 29243160 (+) True XLOC_030149
TCONS_00061713 lncRNA downstream 641098 29560059 ~ 29562497 (+) False XLOC_030150
TCONS_00061714 lncRNA downstream 641694 29560655 ~ 29565825 (+) False XLOC_030150
TCONS_00061715 lncRNA downstream 643687 29562648 ~ 29565825 (+) True XLOC_030150
TCONS_00058959 lncRNA downstream 865211 29784172 ~ 29792624 (+) True XLOC_030153
TCONS_00058944 mRNA upstream 56679 28857969 ~ 28859840 (+) False XLOC_030144
TCONS_00058945 mRNA upstream 56713 28858345 ~ 28859806 (+) True XLOC_030144
TCONS_00058942 mRNA upstream 65112 28848870 ~ 28851407 (+) False XLOC_030143
TCONS_00058943 mRNA upstream 65120 28849155 ~ 28851399 (+) True XLOC_030143
TCONS_00058941 mRNA upstream 83569 28830643 ~ 28832950 (+) True XLOC_030142
TCONS_00058946 mRNA downstream 53974 28972935 ~ 29002322 (+) False XLOC_030146
TCONS_00058947 mRNA downstream 54303 28973264 ~ 29002258 (+) True XLOC_030146
TCONS_00058948 mRNA downstream 240816 29159777 ~ 29177066 (+) False XLOC_030147
TCONS_00058949 mRNA downstream 240950 29159911 ~ 29177272 (+) False XLOC_030147
TCONS_00058950 mRNA downstream 241171 29160132 ~ 29177146 (+) False XLOC_030147
TCONS_00058939 other upstream 90379 28824612 ~ 28826140 (+) True XLOC_030141
TCONS_00058938 other upstream 97906 28812453 ~ 28818613 (+) True XLOC_030140
TCONS_00058916 other upstream 874000 28041984 ~ 28042519 (+) True XLOC_030128
TCONS_00058863 other upstream 2683451 26221016 ~ 26233068 (+) False XLOC_030104
TCONS_00058859 other upstream 2696362 26212632 ~ 26220157 (+) False XLOC_030103
TCONS_00058952 other downstream 295569 29214530 ~ 29214646 (+) True XLOC_030148
TCONS_00058961 other downstream 875115 29794076 ~ 29799058 (+) True XLOC_030154
TCONS_00058963 other downstream 884450 29803411 ~ 29812612 (+) False XLOC_030155
TCONS_00058970 other downstream 912234 29831195 ~ 29847899 (+) False XLOC_030157
TCONS_00058972 other downstream 912444 29831405 ~ 29843117 (+) True XLOC_030157

Expression Profile

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