RNA id: TU2625261



Basic Information


Item Value
RNA id TU2625261
length 224
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G2295089
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10549140 ~ 10573417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaagaaaaacccttgaatgagtaggtgtgtccaaacttttggctggtactgtagatacagtagggagaaaagtatgtgaaccctttggaaatacctggatttctgcataaattggccataaaatgtgatctgatcttcatctaggtcaccacaatagacaaacattctgcttaaactaataacacacaaacaatcatacgctttcatgtctttattgaacacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2625254 lncRNA upstream 21062 10527119 ~ 10528078 (+) True G2295082
TU2625235 lncRNA upstream 23255 10524658 ~ 10525885 (+) False G2295080
TU2625275 lncRNA downstream 22017 10595434 ~ 10598111 (+) False G2295101
TU2625277 lncRNA downstream 22017 10595434 ~ 10598111 (+) False G2295101
TU2625278 lncRNA downstream 22017 10595434 ~ 10598111 (+) False G2295101
TU2625279 lncRNA downstream 22017 10595434 ~ 10598111 (+) True G2295101
TU2625328 lncRNA downstream 75386 10648803 ~ 10695787 (+) True G2295139
XM_021559822.2 mRNA upstream 27742 10509464 ~ 10521398 (+) False LOC110487904
XM_021559821.2 mRNA upstream 27742 10514909 ~ 10521398 (+) False LOC110487904
XM_036971644.1 mRNA upstream 39858 10507093 ~ 10509282 (+) True LOC110489373
XM_036971832.1 mRNA upstream 59085 10466365 ~ 10490055 (+) True LOC110489372
XM_021562146.2 mRNA upstream 107471 10437677 ~ 10441669 (+) False si:ch211-199g17.9
XM_036971416.1 mRNA downstream 4989 10578406 ~ 10586437 (+) True btd
XR_005041388.1 mRNA downstream 93273 10666690 ~ 10669052 (+) False LOC110487909
XM_021559826.2 mRNA downstream 93275 10666692 ~ 10669052 (+) True LOC110487909
XM_021559827.2 mRNA downstream 96831 10670248 ~ 10675600 (+) True polr1f
XM_036971573.1 mRNA downstream 185634 10759051 ~ 10795090 (+) False LOC110489377
TU2625227 other upstream 27833 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 225552 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 417489 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1211385 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1445954 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 712076 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 990130 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1333290 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1341779 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 3056645 13630062 ~ 13630795 (+) True G2298390

Expression Profile