RNA id: TU2625279


Basic Information

Item Value
RNA id TU2625279
length 2597
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G2295101
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10595434 ~ 10598111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGAGTTCAGCGTTTCCAAAGGAATAGTTTGATAAGCATGATGCAAAAAAAAAGACCCCAGAACAGGAGTCTCCAACTGtgctcctggagagctacccatCCTGAGCAGGATTCTGCTCTAACACACCTGGTCCTGCTAAacagctgctgctcctcctccaaCACCTTGATTGGTTAAATTGGGTGTGTCAGAATAGAGCAGGGTTGGAGAAAAAgttctccaggaggagggttgaCCACCCCAGCTTCTAGAACCTACCCCTGGCTCCAGAGTCTTGAGAGTTCTCTGGCTCCAGAGTCTTGAGAGTTCTCTGGCTCCAGAGTCTTTAGAGTTCTCTTCAGTCTAAAATGACCATGACATTCTTTTTGATCCTCATCTTTTGTTAAAGAAAAATATGAAAATAGAGTAGACGGAACATTTAGGCACACTATAGACACGTACTGTACACAGATATGCACATGGTTCATTATCATAGATTCATAATGTACTAGGAGATCCCGGCTTTTCATTGCAACGCTTCATTCAAATGTACATGATGCTTGCAGTGTTGTCTCATATTGTGTTCCTCTGTTAGATTCTGTGCCCCGTTCATTTAATGATTAATACAACGCAGGAAAATGTTGACGTGGGGTAAACCCTGTGGACATCAATAGCCGAGACATCCTGAATGGAGGCTTTAAAGATGAAGTCCTGTGGGGTTCCCCTTGTCACCTCCCCTGTCCGCGGACAAATATCCACTTCCTTTTAAAAGTCACACAGCTCAGAATTCATGTCCTCACACTGCCAATCACGGTCTAGAGCTGTTCAGTGCCTGCCAATCACAGCAGAGGGACAGTTCCATCCAATGGCAGCAGTGGAATGGAGCTCTGTTCGGCGAATGAAAGAACTCCGGTACTAAGCGTTATTTAGCAGTGATTCTACAGAAACATGGCTTTCCTGCGATTTGATTGGACAGATGACCCAAAGTCTCTCCTGTCATTGGTTCTTACAACAGTGAATAATTTCTGTTCACTCTCCAATCAACAGGTTCATATGCATAATAAGCCCTTCCACCATATCTCTAGACCAATGAACTATAGCTTTCTATCCAGAGGCTTTAGCTCGACTGGCTAGATCACTCTTGCTGACACATCGGCATGGAAACCACATTCATCAGGagtaaaataataattaaaaaaagaCGTATAAAACGAGTCTGCAATtaaatgttgattttttttttttacaacggaATGTAGGGTTAGAATTTCTTTGGGAAGGGGGGAAAATTCTTTCACCTTTTCTACAATTTTTCCAAAACGGTATACTTTTCTATTTTTATACAATTATTCAAAAACTCAGGCGTCAAATAAAAATATTGCACAAAATGAAAATTTCTCTGAATGAAAGTGTGATATAGCAGGGATATCAGTGTGTTTTCTCTTTGTTACTTAGTGGTATGATACTACAGCATGGGCCCCACACTGGCACAGTGTCTGACTGGGGAGGGCTGCATCttacggccacacacacacacacactctcaaaacGCACACGCCCAGTGAGTATATTCTACTCTACAGACAGCAACATTCACAGTCTGGCCTGTCATTTCATTCTGTCTCATTCCAAAATGTAGTGGATTACTATGAGACGGTGTCAGTCCATTAGAACGGGCCATTTCACATTTACCCAGGCCTCACCGGCAGGGGAGCTGTTCATATCCTGCTTTCCATTAACATGAAGCACAGTAGAGCTGTCCATCATCCccgtaaacaaacaaacaaaaacagttAGAGCTGTGGTTGTCATGGCTACTGACAGGCGCATTAAAAAAAGGGGGAGTGGACTTTAGATCAAACTCAGCCTCCTCGTGTTCTAGAGGATTATGACGGGATGATGATGTCACATTGACAAACAAACGCCTTGCAGAACCGGATGTGGTTGATGCTTTCTGTCTCACAAACCATGGCATCCTCTATGCCATGTTCCCCCCTCCCCTATCAATCTATTTCTGTATACGCGGCCTGGTATCAGGAAGTGAGATCACCTGCTGGGCATATCAGAGCAGCTCTCATCAGAGCAGCTGTGCCAGTCTGACAACACATCTACAATAAAACAGTTAGCATAAAACAAATAAAACCCAAATCAGTTTGTCCACGCTACAGGAGTGTGTTTGTGAGGCACGTAGGGGAAGTGGAGAGCAGGGCAGAGTTAACAACTAGGATGGTCCCAACAATCCCTTCGAACGagggcagaacacacacacacatacacacacacacacgttaacctCTTCTCAACAGCACACACCATCCCCAcaactctcctccctcttttctcttacACCGGGTGTCACCCGGTAACCCTGCCCACTTCCAGTCTCCTGTCACCTCTTCGGGAAGGTGCTCTTGACTTTCTGTGTGTATCTGGCTGTGCGCGGCGAGCGAGAGTGGAGTTTGACGAACAGCTCAGGGAACTTGTAGTGAGGGAACATGGTCTCCAGGAAGCCTTCTAGGAGCACGTAGACCAGCCGACGATTCATTGGTCCGTGTTGGAACATGTCAAACACACGAAGGATTCCCTTACGAGTCGTATCCGCCCCGATGATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2625262 lncRNA upstream 20247 10550102 ~ 10575187 (+) True G2295090
TU2625261 lncRNA upstream 22017 10549140 ~ 10573417 (+) True G2295089
TU2625245 lncRNA upstream 23190 10568847 ~ 10572244 (+) True G2295081
TU2625254 lncRNA upstream 67356 10527119 ~ 10528078 (+) True G2295082
TU2625238 lncRNA upstream 69549 10524658 ~ 10525885 (+) False G2295080
TU2625328 lncRNA downstream 50692 10648803 ~ 10695787 (+) True G2295139
TU2625338 lncRNA downstream 64520 10662631 ~ 10663333 (+) True G2295147
TU2625344 lncRNA downstream 71318 10669429 ~ 10669848 (+) False G2295152
TU2625343 lncRNA downstream 71428 10669539 ~ 10669848 (+) True G2295152
TU2625355 lncRNA downstream 107651 10705762 ~ 10706065 (+) True G2295163
XM_036971416.1 mRNA upstream 8997 10578406 ~ 10586437 (+) True btd
XM_036971392.1 mRNA upstream 26704 10541656 ~ 10568730 (+) False LOC110487905
XM_036971391.1 mRNA upstream 26704 10541658 ~ 10568730 (+) True LOC110487905
XM_021559822.2 mRNA upstream 74036 10509464 ~ 10521398 (+) False LOC110487904
XR_005041388.1 mRNA downstream 68579 10666690 ~ 10669052 (+) False LOC110487909
XM_021559826.2 mRNA downstream 68581 10666692 ~ 10669052 (+) True LOC110487909
XM_021559827.2 mRNA downstream 72137 10670248 ~ 10675600 (+) True polr1f
XM_036971573.1 mRNA downstream 160940 10759051 ~ 10795090 (+) False LOC110489377
XM_036971572.1 mRNA downstream 160942 10759053 ~ 10809399 (+) True LOC110489377
TU2625227 other upstream 74127 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 271846 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 463783 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1257679 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1492248 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 687382 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 965436 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1308596 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1317085 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 3031951 13630062 ~ 13630795 (+) True G2298390

Expression Profile