RNA id: TU2625343


Basic Information

Item Value
RNA id TU2625343
length 232
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2295152
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10669429 ~ 10669848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTTCACCACTACTCCTATAACTTCACCACTACTCCTTTAACTTCACCACTACTCCTATAACTTCCACTACTCCTATAACTTCACCACTACTCCTATAACTTCACCACTACTCCTATAACTTCACCACTACTCCTATAACTTCACCACTACTCCTATAACTTCACCACTACTCCTATAACTTCACCACTACTCCTCTAACTTCACCACTACTCCTATAACTTCACCACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2625338 lncRNA upstream 6206 10662631 ~ 10663333 (+) True G2295147
TU2625275 lncRNA upstream 71428 10595434 ~ 10598111 (+) False G2295101
TU2625355 lncRNA downstream 35914 10705762 ~ 10706065 (+) True G2295163
TU2626062 lncRNA downstream 84049 10753897 ~ 10754122 (+) True G2295698
TU2626065 lncRNA downstream 88367 10758215 ~ 10758714 (+) True G2295701
TU2626075 lncRNA downstream 115627 10785475 ~ 10785798 (+) True G2295711
TU2626076 lncRNA downstream 116770 10786618 ~ 10787039 (+) True G2295712
XR_005041388.1 mRNA upstream 487 10666690 ~ 10669052 (+) False LOC110487909
XM_021559826.2 mRNA upstream 487 10666692 ~ 10669052 (+) True LOC110487909
XM_036971416.1 mRNA upstream 83102 10578406 ~ 10586437 (+) True btd
XM_036971392.1 mRNA upstream 100809 10541656 ~ 10568730 (+) False LOC110487905
XM_021559827.2 mRNA downstream 400 10670248 ~ 10675600 (+) True polr1f
XM_036971573.1 mRNA downstream 89203 10759051 ~ 10795090 (+) False LOC110489377
XM_036971572.1 mRNA downstream 89205 10759053 ~ 10809399 (+) True LOC110489377
NM_001124657.1 mRNA downstream 332200 11002048 ~ 11004436 (+) True il6
XM_021559855.2 mRNA downstream 523202 11193050 ~ 11234468 (+) True LOC110487935
TU2625227 other upstream 148232 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 345951 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 537888 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1331784 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1566353 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 615645 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 893699 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1236859 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1245348 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2960214 13630062 ~ 13630795 (+) True G2298390

Expression Profile