RNA id: TU2626075


Basic Information

Item Value
RNA id TU2626075
length 324
lncRNA type intronic
GC content 0.31
exon number 1
gene id G2295711
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10785475 ~ 10785798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtgaaataaacaataaaaattaacagtaaacattacacatacagaagtttcaaaacaataaagacattacaaatgtcatatcatatatatacagtgctttaacaatgtacaaatggttaaaggacacaagataaaataaataagcataaatatgggttgtatttacaatggtgtttgttcttcactggttgcccttttctcgtggcaacaggtcacaaatcttgctgctgtgatggcacactgtggaatttcacccagtagatatgggagtttatcaaaattggatttgttttttcgaattctttgttgatctgtgtaatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626065 lncRNA upstream 26761 10758215 ~ 10758714 (+) True G2295701
TU2626062 lncRNA upstream 31353 10753897 ~ 10754122 (+) True G2295698
TU2625355 lncRNA upstream 79410 10705762 ~ 10706065 (+) True G2295163
TU2625344 lncRNA upstream 115627 10669429 ~ 10669848 (+) False G2295152
TU2625343 lncRNA upstream 115627 10669539 ~ 10669848 (+) True G2295152
TU2626076 lncRNA downstream 820 10786618 ~ 10787039 (+) True G2295712
TU2626078 lncRNA downstream 11411 10797209 ~ 10797612 (+) True G2295714
TU2626084 lncRNA downstream 21170 10806968 ~ 10807293 (+) True G2295720
TU2626058 lncRNA downstream 29140 10814938 ~ 10816360 (+) True G2295694
TU2626085 lncRNA downstream 31714 10817512 ~ 10817834 (+) True G2295721
XM_021559827.2 mRNA upstream 109875 10670248 ~ 10675600 (+) True polr1f
XR_005041388.1 mRNA upstream 116423 10666690 ~ 10669052 (+) False LOC110487909
XM_021559826.2 mRNA upstream 116423 10666692 ~ 10669052 (+) True LOC110487909
XM_036971416.1 mRNA upstream 199038 10578406 ~ 10586437 (+) True btd
XM_036971391.1 mRNA upstream 216745 10541658 ~ 10568730 (+) True LOC110487905
NM_001124657.1 mRNA downstream 216250 11002048 ~ 11004436 (+) True il6
XM_021559855.2 mRNA downstream 407252 11193050 ~ 11234468 (+) True LOC110487935
XR_005041365.1 mRNA downstream 477734 11263532 ~ 11264866 (+) False LOC118946500
XM_036971459.1 mRNA downstream 767551 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 767551 11553349 ~ 11656524 (+) False LOC110487925
TU2625227 other upstream 264168 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 461887 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 653824 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1447720 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1682289 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 499695 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 777749 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1120909 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1129398 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2844264 13630062 ~ 13630795 (+) True G2298390

Expression Profile