RNA id: TU2626058


Basic Information

Item Value
RNA id TU2626058
length 1262
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G2295694
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10814938 ~ 10816360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCCACCAATCCTGGCAGAGCTACATCTTAAAAGGTGCACTCAGCAATATGACATCATCGAGCAGGAAGTCACGCCGTTGTGTATGATGGCGTCAGTATAGCTTGAACGCTGGGAGCTGACTGGCTGTTTCATACCAAAATAAAACCTTTCCTTTTCCTCTCTTTAATGTAAACATGGTTTCACTAGGATTGTCTTATAGTATTGCTTTCAGTAAACAGCCTGTTGGGAGAAAGAAAGCTCGATTGGTCGTTTTATGGAAGCAAATATTTAGAATGTCAAGCGTTTCTTTCTAGGAATGCATCATTTATAAATCTGCTTATTTCTACTATTTTAAAAGTCTATTCCTCCTTGTATTGTCTGTCTTCTGTTTATCAGATCTTCTTTACTAGAACTATAGTCctgttgaaacacacacacacacacaccagctcctctcacctgtctgtcaaCAGTCTAGACCACGCCACATATCATgtttcatcatcatcctcatcaccatAGTTACAGAACATCTTTGTGCATAGAGATTGTTGGCGTTCCAAATGTTACCctggccatttgggacacatccaatGTCTCTTCTTGATGTTTTACAACTGTTTTGTGCTAGTCTAATGAACCTATCCAAAATGACACCCTCTTCCTAACATAACAAACTACTCAGaaggctctggccaaaagtagtgcactatataggggatagatGTGCCTTTTCTCCTGACCTCTGTTCTGTTATTAAATACCCTTCTACAAATTCACACCTTTAGACTGTTGTTGGACTCAATTATTAGTTTAGATTCAgatttctctgtctgtttgtcattTTCAGTCAGTCATATTTGTCTTCTGTTTGAGTCCGtttcaaaaacaaacaaataataataaaaattatCTACCACCTGACTGCCACGGTGTAACCATGGAGACCAACCTGGAAGTCAGCCCTCCCTGCTTCTTCCTTTCACAGGAAGTGGTCACCGGGCACTACTCAaaactcctcctcttcctcctcttctccctccatttGATTCGGCGAGGAGGCTGTTGGCGTGGCGGGGGCGGAGTCCTGGGAGAGCGTCGCCATAGTTACGATGCGAGGGGAGGAGCCTAAGCCCTGGTTAGAATTTTCCATGTCGTCGGTGGTGATGATGGCGAGAGAAGCCCCTCCCTTCTTGTTCAGGTGGGTTTTGATGTGTTTGGAGAGATGGTCGCTACGCATGAAACGCTTACTGCACTCTGGACACTCAAACCTCTTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626084 lncRNA upstream 7645 10806968 ~ 10807293 (+) True G2295720
TU2626078 lncRNA upstream 17326 10797209 ~ 10797612 (+) True G2295714
TU2626076 lncRNA upstream 27899 10786618 ~ 10787039 (+) True G2295712
TU2626075 lncRNA upstream 29140 10785475 ~ 10785798 (+) True G2295711
TU2626065 lncRNA upstream 56224 10758215 ~ 10758714 (+) True G2295701
TU2626085 lncRNA downstream 1152 10817512 ~ 10817834 (+) True G2295721
TU2626099 lncRNA downstream 15610 10831970 ~ 10908016 (+) False G2295733
TU2626100 lncRNA downstream 15610 10831970 ~ 10908016 (+) True G2295733
TU2626068 lncRNA downstream 17995 10834355 ~ 10891081 (+) True G2295704
TU2626109 lncRNA downstream 29055 10845415 ~ 10846724 (+) True G2295742
XM_036971572.1 mRNA upstream 5539 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 19848 10759051 ~ 10795090 (+) False LOC110489377
XM_021559827.2 mRNA upstream 139338 10670248 ~ 10675600 (+) True polr1f
XR_005041388.1 mRNA upstream 145886 10666690 ~ 10669052 (+) False LOC110487909
XM_021559826.2 mRNA upstream 145886 10666692 ~ 10669052 (+) True LOC110487909
NM_001124657.1 mRNA downstream 185688 11002048 ~ 11004436 (+) True il6
XM_021559855.2 mRNA downstream 376690 11193050 ~ 11234468 (+) True LOC110487935
XR_005041365.1 mRNA downstream 447172 11263532 ~ 11264866 (+) False LOC118946500
XM_036971459.1 mRNA downstream 736989 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 736989 11553349 ~ 11656524 (+) False LOC110487925
TU2625227 other upstream 293631 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 491350 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 683287 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1477183 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1711752 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 469133 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 747187 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 1090347 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 1098836 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2813702 13630062 ~ 13630795 (+) True G2298390

Expression Profile