RNA id: TU2626214


Basic Information

Item Value
RNA id TU2626214
length 209
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G2295826
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11017443 ~ 11060069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattttcccatgatgtcaagcaaagaggcactgagtttgaaatacatacatacaggtacacctccaactgccttaaattatgtcaattagcatatcagaatgttttatttttttattttacctttctaggcaagtcagttaagaacaaattcttattttcaatgacagtgggttaactgcctgttcaggggcagaacgacagatttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626201 lncRNA upstream 4782 11009175 ~ 11012661 (+) True G2295813
TU2626198 lncRNA upstream 11456 10978353 ~ 11005987 (+) True G2295811
TU2626181 lncRNA upstream 61078 10956157 ~ 10956365 (+) True G2295799
TU2626137 lncRNA upstream 117518 10891529 ~ 10899925 (+) True G2295760
TU2626136 lncRNA upstream 125471 10891529 ~ 10891972 (+) False G2295760
TU2626261 lncRNA downstream 8215 11068284 ~ 11090111 (+) True G2295866
TU2626462 lncRNA downstream 35164 11095233 ~ 11095444 (+) True G2296030
TU2626467 lncRNA downstream 43638 11103707 ~ 11106272 (+) True G2296035
TU2626482 lncRNA downstream 64153 11124222 ~ 11129511 (+) True G2296048
TU2626483 lncRNA downstream 65042 11125111 ~ 11127387 (+) False G2296049
NM_001124657.1 mRNA upstream 13007 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 208044 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 222353 10759051 ~ 10795090 (+) False LOC110489377
XM_021559827.2 mRNA upstream 341843 10670248 ~ 10675600 (+) True polr1f
XM_021559826.2 mRNA upstream 348391 10666692 ~ 10669052 (+) True LOC110487909
XM_021559855.2 mRNA downstream 132981 11193050 ~ 11234468 (+) True LOC110487935
XR_005041365.1 mRNA downstream 203463 11263532 ~ 11264866 (+) False LOC118946500
XM_036971459.1 mRNA downstream 493280 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 493280 11553349 ~ 11656524 (+) False LOC110487925
XM_036971462.1 mRNA downstream 493280 11553349 ~ 11656524 (+) True LOC110487925
TU2625227 other upstream 496136 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 693855 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 885792 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1679688 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 1914257 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 225424 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 503478 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 846638 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 855127 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2569993 13630062 ~ 13630795 (+) True G2298390

Expression Profile