RNA id: TU2626503


Basic Information

Item Value
RNA id TU2626503
length 246
lncRNA type intronic
GC content 0.44
exon number 2
gene id G2296064
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11151211 ~ 11151682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacacacaaacgcacagacacacaaacacacaaacgcacaaacgcacagacacacaaacacacaaacacacaaacacacagacacacaaacacacagacacacagacacacaaacacacagactcacaaacgcacaaacacacaaacacacaaacacacagacacacaaacacacagacacacagacacacaaacacacagacacacaaacacacaaacacacagacacacagacacacaaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626488 lncRNA upstream 20754 11129738 ~ 11130457 (+) False G2296052
TU2626489 lncRNA upstream 20754 11129738 ~ 11130457 (+) True G2296052
TU2626482 lncRNA upstream 21700 11124222 ~ 11129511 (+) True G2296048
TU2626486 lncRNA upstream 23385 11126203 ~ 11127826 (+) True G2296050
TU2626483 lncRNA upstream 23824 11125111 ~ 11127387 (+) False G2296049
TU2626508 lncRNA downstream 4044 11155726 ~ 11156117 (+) True G2296068
TU2626509 lncRNA downstream 4707 11156389 ~ 11156685 (+) True G2296069
TU2626557 lncRNA downstream 17573 11169255 ~ 11169454 (+) True G2296097
TU2626567 lncRNA downstream 29074 11180756 ~ 11180980 (+) True G2296107
TU2626577 lncRNA downstream 33126 11184808 ~ 11185097 (+) True G2296114
NM_001124657.1 mRNA upstream 146775 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 341812 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 356121 10759051 ~ 10795090 (+) False LOC110489377
XM_021559827.2 mRNA upstream 475611 10670248 ~ 10675600 (+) True polr1f
XM_021559826.2 mRNA upstream 482159 10666692 ~ 10669052 (+) True LOC110487909
XM_021559855.2 mRNA downstream 41368 11193050 ~ 11234468 (+) True LOC110487935
XR_005041365.1 mRNA downstream 111850 11263532 ~ 11264866 (+) False LOC118946500
XM_036971459.1 mRNA downstream 401667 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 401667 11553349 ~ 11656524 (+) False LOC110487925
XM_036971462.1 mRNA downstream 401667 11553349 ~ 11656524 (+) True LOC110487925
TU2625227 other upstream 629904 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 827623 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1019560 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1813456 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 2048025 9094792 ~ 9103186 (+) True G2294081
TU2626619 other downstream 133811 11285493 ~ 11290303 (+) True G2296150
TU2626760 other downstream 411865 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 755025 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 763514 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2478380 13630062 ~ 13630795 (+) True G2298390

Expression Profile