RNA id: TCONS_00061714


Basic Information

Item Value
RNA id TCONS_00061714
length 3105
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id XLOC_030150
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29560059 ~ 29565825 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATTATACAATAGAATTTAGGAAACCAGTTCAACCTCTTCACACTCCATCACAGTAGGTGGCGATATGCACCTTTAAAGTTGGTTCGCAACTCGCCATAAAACGAAGAAGAAGAAGGTTGATCTGAGAGTGCATGGTGATGCGATGGCGGAGTGAATAGCACGTTTGcatcatagcaagaaggttgctggttcgagcctcggcagggtgagttggcatttctttgtggagttttcatgttctccccatgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgcggtacaggtgaattgggtatgctaaaattgaccatagtgtttgagtgtgtgtgaatgtgtgtatggatgtttcccagtgacgggttgcggctggaagggcatccgctgcgtaaaaattatgctggataagttggcgggtcattctgctgtggtgacccctgattaataggaggactaagccgaaaagaaaacaaatgaatgaatgttataccTTTTATGCAATATGAAGTCTGTGGTGTTAAATTTTGTCTGTGGTGTAACTTTAGAATGTCTGAAATTTCTTCATTCAATCTTATATTTCAATGTTTTTAGACTTTAAATTGGTTTTGATATTTATAAGTCTATAAAGGCGCCATTTCCACTTTCTTTTGTATGTATATCTAAAttaaagggggaaaaagaaagacaaagaaaatgtTCTCCTTTGGCAAAAATAGAAAGCCCCCAGtgagtattcatttattcattaattttcttttcgaattagtccctttattaatcaggggtcaccacagcggaatgaacagccaacctatccaggatatgtttttatgcagcggatgcccttctagctgcaacccatccccagGGgaacccggagtaaacccacatgaacacgggaagaacatgcaaactccacacagaaatgccaactggcccagcagaggctcgaaccagagacctttaCCATGACGCCCCATGCTTcgcaacagaaaaaataaagatGCAATAACAAGGACTGAGAAAAGAAGAACGGCGGCACGCCACACATCTGGACGCAGTGCTTTCCTCACCATCGCATTTTCAGCATCCAGCAAGTTACTTAAGCTTAGCATGTAGCCAAGAGACCAGCCGACAGAGGTGTCTTCAACCTGCAAACCAACACAATGTGTCGACGTTACTGACAGGATATGTCTTAAAACTGCATAGTGGTCTTTCTGAGTGTCTTACTTTTTCCTGAAAGGAGATGTGTGGAAAGGAGAGATCACTGAAACCATATCCATTAATCAGGAGCACCCGCATAAGCACAGAGTCTGCACAGTAGTCTCTCAAATGATCCCCCTCAGTGGGAAACTTGTTCTGCATCTGAGAAAGAAAGAGGGAGTTAGACGGTATTGCCTAAAGGGAATATTTAAAGTTTAATCACATTTGAGTTTAATTAAGGGCTGGTCTAAAGAATTTTTAGCTCTGACAAGCTTGGTAATACACTTGGTAGTGTTGGGTTgaatttgggacttgtggagctgcgcattgatggactttcagcagtgaaaattaaaccacactgaactgaaccaaactgaacttcaactctaaaaattGGACTGATACAGTATTAATTTACAACAAATTCTGTGTTGAGCTGCTTtaacagtctacattgtaaaagagctatagaaataaaggttaAGTGAACTGAATTTCATAAACAGCTAAGATGAAATACTGCATTAGTTTATAATGATTCAATCAGACTATACAAAGTATTCAGAAGAGCTGTATCTACAGTATAGAGAAGAAAATGCAACCTTAGATTGACAAGTGAGTCGAAAGTGATGGAATAATTGTTTTCAGTTTACTCATCCTGCAGCCAtccaaaatgaagataaattTTTCTTTAGTGTAACATAAAAAGGTTTTAGCTGAAACTATAGCAAGTAAACCGCTAATTTTAAAGGCAGGGTACTTAGTAACTAAGCTGGTGACTATTTTCAGGCTTTCAAGCAGGGAAACTTTGAATTTTCCATCATGATGTAAATATAGATTAGTCAATCTTTAAACAGGTTATTTATCCtacctctttttttattttgagcaagctgctaatggtctaatccgattcaatgatttatttattgtttctggCTGGTGAATGAGAGATGAGGTTATCTCCCTCATCATTTCAaagttctgtttttgttttttgctggaGGCATGGCTTTTTAAACTGATAATCTAAGGCAGACAGGGTCTTTAGCTTTAGCAACAGTTTTAGCCTCTCTAAAATCAGCTACCTTACCTTTAAGAGTCAACAAATGGAAGCTTGTATTGAATAACTAATTAATACTCAGTTTCTTGTAGGGACCAATCAACGTGCTTCATAAAATCTCAATGATTGTAGCCAGTGTTTTGCATGATTTGTGACTCCCAAAGTGCTAGTAGTTCACCAAGAAGCAGCTACTTCTACTTTAATTGTTTACTGAAGAAAAACGGGGACAGACTAGTCTTCGGTCCAGctttccagcctccggcgcctagactgcagctctgcacaagacgtttggccagaggagaaatgatcgtgcccaactgagcctggtttctctcaaggttttttaattctttactttcgccaattagtgaagtttttttCTCACCACCGCCACTGGCTTTCATGGTTTAGGATCaatagagctacgcatcgatggatttgctcttcagagtctttggactctcagtagtgactattaaaccacactgaactgagcgaaactgaactgaacttaaacgctaaaaactgaactgacactgtttcagtttagTATGATCttcaatgtgaagctgctttgacacaatgtacattgtaaaagcgctatacaaataaaggcaaatttaattgaatttaaaaaaacaccTGCATCTCAGATGACCTTGTGTacatgcactctcagaaataaaggtacacaaattgtcaatggggtggtaccttttcaaaaggtacagttTTGACAattagtacctttagggtacactttttgtgcctttaaggtttacttttgtacttttatggtacacatttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061712 lncRNA upstream 317495 29241794 ~ 29243160 (+) True XLOC_030149
TCONS_00061711 lncRNA upstream 641694 28916519 ~ 28918961 (+) True XLOC_030145
TCONS_00058935 lncRNA upstream 786754 28773214 ~ 28773901 (+) True XLOC_030138
TCONS_00061710 lncRNA upstream 998518 28561003 ~ 28562137 (+) True XLOC_030137
TCONS_00058932 lncRNA upstream 1057478 28497934 ~ 28503177 (+) True XLOC_030136
TCONS_00058959 lncRNA downstream 218347 29784172 ~ 29792624 (+) True XLOC_030153
TCONS_00061717 lncRNA downstream 336328 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061716 lncRNA downstream 336328 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061719 lncRNA downstream 336328 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA downstream 336328 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00058949 mRNA upstream 383383 29159911 ~ 29177272 (+) False XLOC_030147
TCONS_00058950 mRNA upstream 383509 29160132 ~ 29177146 (+) False XLOC_030147
TCONS_00058948 mRNA upstream 383589 29159777 ~ 29177066 (+) False XLOC_030147
TCONS_00058951 mRNA upstream 396477 29160324 ~ 29164178 (+) True XLOC_030147
TCONS_00058946 mRNA upstream 558333 28972935 ~ 29002322 (+) False XLOC_030146
TCONS_00058953 mRNA downstream 86373 29652198 ~ 29672144 (+) False XLOC_030151
TCONS_00058954 mRNA downstream 86688 29652513 ~ 29667421 (+) False XLOC_030151
TCONS_00058955 mRNA downstream 105856 29671681 ~ 29711948 (+) True XLOC_030151
TCONS_00058956 mRNA downstream 148961 29714786 ~ 29745566 (+) False XLOC_030152
TCONS_00058957 mRNA downstream 149215 29715040 ~ 29745260 (+) False XLOC_030152
TCONS_00058952 other upstream 346009 29214530 ~ 29214646 (+) True XLOC_030148
TCONS_00058939 other upstream 734515 28824612 ~ 28826140 (+) True XLOC_030141
TCONS_00058938 other upstream 742042 28812453 ~ 28818613 (+) True XLOC_030140
TCONS_00058916 other upstream 1518136 28041984 ~ 28042519 (+) True XLOC_030128
TCONS_00058863 other upstream 3327587 26221016 ~ 26233068 (+) False XLOC_030104
TCONS_00058961 other downstream 228251 29794076 ~ 29799058 (+) True XLOC_030154
TCONS_00058963 other downstream 237586 29803411 ~ 29812612 (+) False XLOC_030155
TCONS_00058970 other downstream 265370 29831195 ~ 29847899 (+) False XLOC_030157
TCONS_00058972 other downstream 265580 29831405 ~ 29843117 (+) True XLOC_030157
TCONS_00058974 other downstream 424322 29990147 ~ 29990221 (+) True XLOC_030160

Expression Profile

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