RNA id: TU2626619


Basic Information

Item Value
RNA id TU2626619
length 2038
RNA type TUCP
GC content 0.60
exon number 2
gene id G2296150
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11285493 ~ 11290303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCCACAGAGAACTGTACGATGGCAAAGTTGGGCGTGTGGCTGTCGTCGATGCGTTCCACGGTGGACGAGTCTATCTTCAGCTCGCTGCTGATCTCAGCGCTCTGGATAAAGTCCTCCGTCTTCAGGTCCTCCACGCGCTTCAGCTCCCCGTCCGCCAGCTGGATGATGGAGCCCTTGATAAAGTAGGCGGGCAGCGAGGAGCCCGAGGGGGCCGAGGAGGGGGCCTGGGGGGTTGGGACCACCGGGAGGTGTAGCTGGGCCTGGACCATGCTCCCCCCAGCCCCAGCAGGGTAGGACAGAGGAGGGTAGGGGGCCGGGACCTCAAATAGATGCTCCTCTCTGgggttagtggtggtggtggtggtggcaacGTAGGCGTGGGAGAGTGTGGCAGGGAAGGGCTGTGGTTGACTTGTGGTGGCTATGTGTGCAGTATGGCCAGCCTCCAGGCTGGTGGCCCCGGCCCCACTGACGGGGATGAGCAGGTGCTGGGACAGACTGGTGTGGTACTGTTGCCCCCCCGCACCCCCAGACAGATAGCCGATGATGGGCTGCCCACCTGGGCCAGCCTGGTAGAAGTTGGTGGAGAGTTGGCCTAAGGAGATGGGCGATGCATCGCTGGCGTTGTGTGTGGGCTGGATGACTGTGTGAGTGTGGGGGGACAGGGAGCTGACGGCTGCCTTAAGACTCTCCACATTGAGCGCAGGGGGGAAGGTGAacgtggaggaggaggtgcgGTACACAGGTTTACCCAGGAGGAGGCTGCCTTTCTCTGGGTGCAaggcagaggagaggggtagTTTTTCGGGACTCTGGTGGTCTTGTCCTCCATGACTGTTGGGGACGAGCATGAGAGAGGTCCGTAGCCCTGAGGCATCATGGGAGGTATAGGTCTCATAGTGATGGTGGGAGCTCTGCTGCTGGTGGAGCTGGTgatgggagaaagaggaggaagaagaggaggatgatgatggggCTCCTTTGCTTTCCTTCCTCTCAAAGCGGCCTCTCTTCTCCAGCTCTCCGTTGTGCAGTTCCCTGGGCCGGCCCTCCTCTCTCTTAGTCAGGGGCTCCTCGGAGCCCGCATACTGTACCAGCACCTGGGAGCCCCCGCTGAGGGTGTGGTGGGGGTCGTGGTGCAGGTGGTGGGTCCCTCCGTGGGGCAAGGGGGCAGTCCGGGGGGCCACGTTCTGAGAGGAACCAGAGAGCTGGACGTACTGGGGGCCAGTGTCCGATAGAGCCAGGCCTGGGGGTAGGGACTGGGGTGGGGGGCGACCTGGACCCACAGAGTGGTGCTGGTTCAGCTTGGAGGTGATGGTGGCGTTGGGGTAGGGGTCAGGGTGGGAGCGTTGGGATGTGGAGGTGGGTAGAGGGGGGGGCTGGGAGGAGAGGTAGCCTGGGTAAGGGGAACTGATGACCTGAAGGTTGTGGGGAAGCTGGGTGTAGTGGATGGTCCCCCCTGGTGGGGACAGAGGAGAGCTGTACATGGCAGGGAGCGATGTGGTCACCACTCTGGACTGatgtgatgaagaggaggaacagATGGAGGAAGGGACCAGGAAGTCTGAGTGTGTGGGGATGGTGGAGCATAGTGGTTTGTACTGGGGCACGTCAGACTCACAGGGAGTGCTGGTACGCTGCCCACCTCTACCGCCATCCCCGTTACCTCCACTAATGTCTCTGTTGTGCCCGCCAGCTACACTGGCCAGCCATGTCAGGTTCTCTCCTCGCTGGGTCTCGCTGGCGGGCGCCATCAACAGGGGCCTCTCATCTGCAGTGCTGGCTGGGAAATCTCTCTTCTTGGGGGGCAGACACTCGTTGCTGCGCTCATGGTTGGACTTCATACTGTTGTCTTTTCTCTCTAGACTTTCTGTCACATAGACACGCGTTGCTCCCACGGCAACAACAGGTGTGCCTGTCTCTCTTTTCACACTAACTATCTAGTTCTTATGTCTCTGCCTCGTTCACATTCTCTTTCATTCCTGtctttggctctctctctctctctctctctctctctctctctccctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626613 lncRNA upstream 7089 11262547 ~ 11278404 (+) True LOC118946500
TU2626610 lncRNA upstream 38077 11247083 ~ 11247416 (+) True G2296143
TU2626609 lncRNA upstream 39675 11245613 ~ 11245818 (+) True G2296142
TU2626605 lncRNA upstream 49086 11235687 ~ 11236407 (+) True G2296139
TU2626577 lncRNA upstream 100396 11184808 ~ 11185097 (+) True G2296114
TU2626650 lncRNA downstream 42270 11332573 ~ 11387113 (+) True G2296178
TU2626678 lncRNA downstream 101883 11392186 ~ 11392574 (+) True G2296204
TU2626679 lncRNA downstream 103509 11393812 ~ 11394057 (+) True G2296205
TU2626705 lncRNA downstream 143124 11433427 ~ 11435423 (+) True G2296230
TU2626716 lncRNA downstream 166695 11456998 ~ 11457422 (+) True G2296241
XR_005041365.1 mRNA upstream 20627 11263532 ~ 11264866 (+) False LOC118946500
XM_021559855.2 mRNA upstream 51025 11193050 ~ 11234468 (+) True LOC110487935
NM_001124657.1 mRNA upstream 281057 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 476094 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 490403 10759051 ~ 10795090 (+) False LOC110489377
XM_036971459.1 mRNA downstream 263046 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 263046 11553349 ~ 11656524 (+) False LOC110487925
XM_036971462.1 mRNA downstream 263046 11553349 ~ 11656524 (+) True LOC110487925
XM_021559844.2 mRNA downstream 373697 11664000 ~ 11742813 (+) True LOC110487927
XM_036971057.1 mRNA downstream 524804 11815107 ~ 11841142 (+) False LOC110487931
TU2625227 other upstream 764186 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 961905 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1153842 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 1947738 9335335 ~ 9337755 (+) True G2294452
TU2623927 other upstream 2182307 9094792 ~ 9103186 (+) True G2294081
TU2626760 other downstream 273244 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 616404 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 624893 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2339759 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 2462964 13753267 ~ 13753517 (+) True G2298739

Expression Profile