RNA id: TU2626725


Basic Information

Item Value
RNA id TU2626725
length 304
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G2296249
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11480480 ~ 11480783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACTGTTCTTGTCACGGTGTTGTCTCCTTGTCAGCTGGGGCACAGTCTTTCATTACACTTCTTCAGTTCCAGAGAAAAGAGCCGAGTGGTTAGTCAGTCTGAATAGAACTGTACTGAAGGACATATCACAATACAATATTTAttagacagacaagacagagggAACGACACATGGAGAACGAGTGAGCAagacagcgagggagaaagagcaggcgagacagggatggagagagagcgcgagagagtgagcgtgagcaagagagcgagacagggagagagagagggcgagacggggagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626724 lncRNA upstream 1147 11479051 ~ 11479333 (+) True G2296248
TU2626723 lncRNA upstream 2720 11477552 ~ 11477760 (+) True G2296247
TU2626720 lncRNA upstream 9870 11470175 ~ 11470610 (+) True G2296244
TU2626716 lncRNA upstream 23058 11456998 ~ 11457422 (+) True G2296241
TU2626705 lncRNA upstream 45057 11433427 ~ 11435423 (+) True G2296230
TU2626730 lncRNA downstream 12465 11493248 ~ 11493517 (+) True G2296253
TU2626733 lncRNA downstream 19783 11500566 ~ 11500813 (+) True G2296256
TU2626737 lncRNA downstream 61228 11542011 ~ 11543341 (+) False G2296259
TU2626736 lncRNA downstream 62101 11542884 ~ 11543694 (+) True G2296259
TU2626766 lncRNA downstream 64531 11545314 ~ 11548620 (+) False G2296282
XR_005041365.1 mRNA upstream 215614 11263532 ~ 11264866 (+) False LOC118946500
XM_021559855.2 mRNA upstream 246012 11193050 ~ 11234468 (+) True LOC110487935
NM_001124657.1 mRNA upstream 476044 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 671081 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 685390 10759051 ~ 10795090 (+) False LOC110489377
XM_036971459.1 mRNA downstream 72566 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA downstream 72566 11553349 ~ 11656524 (+) False LOC110487925
XM_036971462.1 mRNA downstream 72566 11553349 ~ 11656524 (+) True LOC110487925
XM_021559844.2 mRNA downstream 183217 11664000 ~ 11742813 (+) True LOC110487927
XM_036971057.1 mRNA downstream 334324 11815107 ~ 11841142 (+) False LOC110487931
TU2626619 other upstream 190177 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 959173 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1156892 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1348829 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 2142725 9335335 ~ 9337755 (+) True G2294452
TU2626760 other downstream 82764 11563547 ~ 11564590 (+) True G2296278
TU2626940 other downstream 425924 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 434413 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2149279 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 2272484 13753267 ~ 13753517 (+) True G2298739

Expression Profile