RNA id: TU2626760


Basic Information

Item Value
RNA id TU2626760
length 1024
RNA type TUCP
GC content 0.49
exon number 2
gene id G2296278
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11563547 ~ 11564590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGGTTTAGTATAGGCCACAGCAGGGTACAGGGTAGTGGTTTAGTATAGGCCACAGCAGGGTACAGAGTAGTGGTTTAGTATAGGCCACAGCAGGGTACAGGGTAGTGGTTTAGTATAGGCCACAGCAGGGTACAGAGTAGTGGTTTAGTATAGGCCACAGCAGGGTACAGGGTAGTGGTTTAGTATAGGCCACAGCAGGGTACAGGGTAGTGAACACCGGGCATACAGAATACTAGCTACACCCTGTTCCTCTACAATCAAGACTGTATAATAATCTAATGACGCCCAGACACATATCAGACACCTGGTTGTCAGGTAGGCAACGCCTTTAAAACATGTTGTCACTCTTGGCCTGTCAGTGTTTTCTAGGCTTTGGAATGTTGGCTCACCATTGTCTGATTGCAGGTCTCAGATTGGTGTTTAGTCCCTACTGTACATACCGTATTACTACTGCCAGCCGTCTTTGTCCAGACTCCAGACACACCTCACATCACGTCGTGTCTGATCTTGCCCGTCCAgatcacacactcactcactcactcactcactcactcactttctcactcactcactcactcactcactcactcactcactcactcactcactcaatctctctctcactcactcactcactcactcactcactcactcacacactcactttctcactcacacactcacacacactgttatcCAACCGGGGGCCCTTAGCAATTTTCTCAGGCTAAcaggaaggagggaggtttgGGCTGGTGTCTGAtagttgtggtgttgttgggcTGCCTGTGTTGCGTCTCGGCTGCTGCACTGCTGACATGAACATTTCCCAGGTATCACCTGGTGACCGGCCATTTCAGAGTAAAcactgtcctggcaccccaatgctGAAATAAACATTTCCCAGGTATCACCTGGTGACCGGCCATTTCAGAGTAAAcactgtcctggcaccccaatgctGAAATAAACATTTCCCAGGTATCACCTAGTGACCGGCCATTTCAGAGTAAAcactgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626766 lncRNA upstream 14927 11545314 ~ 11548620 (+) False G2296282
TU2626767 lncRNA upstream 16324 11545314 ~ 11547223 (+) True G2296282
TU2626736 lncRNA upstream 19853 11542884 ~ 11543694 (+) True G2296259
TU2626737 lncRNA upstream 20206 11542011 ~ 11543341 (+) False G2296259
TU2626733 lncRNA upstream 62734 11500566 ~ 11500813 (+) True G2296256
TU2626791 lncRNA downstream 22185 11586775 ~ 11588213 (+) False G2296297
TU2626792 lncRNA downstream 22185 11586775 ~ 11588077 (+) True G2296297
TU2626797 lncRNA downstream 28933 11593523 ~ 11594319 (+) True G2296302
TU2626799 lncRNA downstream 30113 11594703 ~ 11595368 (+) True G2296304
TU2626817 lncRNA downstream 69358 11633948 ~ 11634420 (+) True G2296321
XR_005041365.1 mRNA upstream 298681 11263532 ~ 11264866 (+) False LOC118946500
XM_021559855.2 mRNA upstream 329079 11193050 ~ 11234468 (+) True LOC110487935
NM_001124657.1 mRNA upstream 559111 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 754148 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 768457 10759051 ~ 10795090 (+) False LOC110489377
XM_021559844.2 mRNA downstream 99410 11664000 ~ 11742813 (+) True LOC110487927
XM_036971057.1 mRNA downstream 250517 11815107 ~ 11841142 (+) False LOC110487931
XM_021559848.2 mRNA downstream 341615 11906205 ~ 11909631 (+) False LOC110487932
XM_021559850.2 mRNA downstream 366968 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA downstream 366977 11931567 ~ 11959079 (+) False LOC110487934
TU2626619 other upstream 273244 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1042240 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1239959 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1431896 10130116 ~ 10131651 (+) False G2294925
TU2624382 other upstream 2225792 9335335 ~ 9337755 (+) True G2294452
TU2626940 other downstream 342117 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 350606 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2065472 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 2188677 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 2449642 14014232 ~ 14015587 (+) True G2298884

Expression Profile