RNA id: TCONS_00058956


Basic Information

Item Value
RNA id TCONS_00058956
length 2780
RNA type mRNA
GC content 0.47
exon number 20
gene id XLOC_030152
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29714786 ~ 29745566 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCCTTCAACTTGTAGTGGACGGAGTAAAAACACGTGTGAAACTTTTCTCTCTAGATGTGCAGTTGTTTACATTGAATATTCACGGTGTAAACGTTAACGCCATGCGCATTTAACGTGCTGCTGACATTTCCGTCACTCGAATAAAGGATAATATTTCCTTTAGCTAGCGCGAGTGTTCTGTCAGAGCGTGGTATAGATATTTTACTAGTACACCTCTTGTTTTAAAAGGGGTTTACAACCTGTTTGCGGTCATGGCTGAGGACACGCTGATGCTCAACATCTCCTCAGGTTCTGTACagtttaacagaaaaacaaaccaGAAGCATTTGTCATCATCAGAGAAATGGGCACAGAAAAAGAGAGTGGCAAAAAGGAAGGCTGCCGTTGAGCCCCAAGAGAGCAGCGCCTCTAAACAGAGGAAGATTAATCAAACTGGTCAACAGCACGCACAAAAGCAAACGCTGCAAACCCCTAGAAGCCCCTCTCAGAGGAGCAATAACAGAGACACAGAGGAGAGCCCGGTCCAGAGAGAAAACTCAGAAGCAAAGTCCCCATCAAAGGTGAAAACATTTCCAAAGAAAGCTCCCACAGAGCATGAAGACCATGGCAGACCATTTATCAAGACATCGTCTCTCTTCAGAAACAACCCAGAGATCCCTGATGTCCTCAGtCCTGCTGTAAATCAAGTGAAGGAGAAAGTCTTCACCAGCAACACGTTTGAAGAGCTGAATCTGCATCCACATCTGGTGGCCACGCTCCATAAGGTGTTGAACGTTAGCAGTATGACGAGTGTCCAGAAACAGACCATACCAGTGCTGATGTCTGGTAAAGATGCTGTAGTGCGCTCCCAGACTGGATCAGGGAAAACATTGGCATATGGGATTCCAATGGTTCAGTTTTTACAAGCGATTCAACCGAAAGTCAAGagATCGGATGGGCCTTTAGCTGTTGTGATTGTTCCAACCAGAGAGCTTGCCTTGCAGAGCTTTCAGATGTTTCAGAAGCTTCTTAGACCTTTCACCTGGATTGTTCCAGGAGTTTTAATGGGaggagagaaaaagaaagcagAAAAAGCCagACTGCGGAAGGGCATAAATGTTCTGATCTCGACTCCAGGCCGACTGGTGGACCACATCAAGAACACACTAAGTATTGCTTTCAGTGCTGTGCGCTGGCTCATTCTGGATGAAGCTGACAGGATTTTGGATTTGGGCTTTGAGAAAGATCTGACTGTGATTCTGAATGCACTGAACGCCGCTGGACCCGACAGGCAAAATGTGCTGCTTTCAGCTACTATAACTGAAGGACTGTCCCGATTAGCCAGTATCAGTATGAAGGATCCTGTGAGTGTCCATGTGTCAGAGGGGAGTGAGGAGACAGTTGAAGCGTGTCCCCAGGCGGCCCCTCAGGCTCTGTCAGACAGCTACGCAGTGCCTGAGAGACTACAGCAGCACGTGGTGGTGGTGCCCAGCAAGCTCCACCTGGTCTGTTTGGCTGCCTTTATTCTGGCCAAATGCAAGTTTGAGCAGCGTCAGAAGTTGATCATCTTCATATCCAGCTGTGAAGCTGTAGAGTTTCTGCTCAATCTCTTTACTGCAGTCCTCTGTGAAATTCCCAGCAACACCTCATCTAAAAGTACCTCATGCCTCAACTTCTACAGACTGCATGGCAACATGAGACAGGAGgaGCGCACTGAAGTCTTCCAAGAGTTCTCTCAGTGTAAAACTGGCATTCTGCTGTGTACGGATGTAGCTGCACGTGGTTTGGATTTGCCTCAGGTTACTTGGATTGTTCAGTACAATCCTCCAGTTTCTGCAGCAGAATATGTTCATCGTGTGGGCCGCACAGCTCGAATCGGAGCTCAGGGTAGCAGCCTGCTCTTTCTCACCCCCTCCGAGACCGCTTTTGTGGATGTGCTGGCCAATCACAACATCAGTTTGTCTGAGATGAAGATGGTGGACATCCTGTCCACACTAATGAAAGACGAGCGCTTTAAAGGCAGAGGGAAATGGGACAGCAAGAGATCAGCGGATGCTTTTGAGCAGGAGGTGCGAGAGAGAGCCACCTTGTTACAGACTGACTTTGAGAATTATGTTCATGCCAGTAACGAGTCTCTGCAAACTGCGAAGAGCGCACTGCAGTGTTTCTTGAGAGCTTATACCACATACCCATCCAGTCTAAAGCACATCTTCCACATCCGCATGCTGCACCTGGGCCACGCTGCTAAGAGCTTTGGCCTGAGGGACGCACCCCAGGGCCTGGCCAGCTCCATAAGCACTAATCCTGCCAACAGCAAACACTCCAAGAAGGCCAAAGACAAAGCCAAGAGcCCTCCCAAGAAACTCACAGCAAAGCAGCGGGTGTCAAACCTCATGCGTTCAGAGTATGACAGTGGCATGGATGGACAATCTAAGGCTaagaagaaaaggaaaaataAGAAGGGTCAAGCAGAGGAATCTACCGATGCATAAAGTGGCCAATACAGGAGagatcagagatgctcttttcgTTTGGGAAGTGCTGAGGTTAGAGTTGTCGTGACCAGGTGGATTCTCAGGGTTGAACACACAGGTGTTTTTCCACAGAGTAACATTTTTTTAGATGTGAAAAAGCACAACCGGTCAGCAGAACAATCTGGGAATTTGCTCAATGCAAAAGCTTAGTTGCAGATGGGAAAATGAGCATGCATGGATTTCTTGCAGTGggtttatgaatttatttttataaatattctgccttatttaagcaatattttattaaaaaaatgctgaatttGA

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-3973 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human DDX31 (DEAD-box helicase 31).

Ensembl:

ensembl_id ENSDART00000148314

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061714 lncRNA upstream 148961 29560655 ~ 29565825 (+) False XLOC_030150
TCONS_00061715 lncRNA upstream 148961 29562648 ~ 29565825 (+) True XLOC_030150
TCONS_00061713 lncRNA upstream 152289 29560059 ~ 29562497 (+) False XLOC_030150
TCONS_00061712 lncRNA upstream 471626 29241794 ~ 29243160 (+) True XLOC_030149
TCONS_00061711 lncRNA upstream 795825 28916519 ~ 28918961 (+) True XLOC_030145
TCONS_00058959 lncRNA downstream 38606 29784172 ~ 29792624 (+) True XLOC_030153
TCONS_00061717 lncRNA downstream 156587 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061716 lncRNA downstream 156587 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061719 lncRNA downstream 156587 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA downstream 156587 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00058955 mRNA upstream 2838 29671681 ~ 29711948 (+) True XLOC_030151
TCONS_00058953 mRNA upstream 42642 29652198 ~ 29672144 (+) False XLOC_030151
TCONS_00058954 mRNA upstream 47365 29652513 ~ 29667421 (+) False XLOC_030151
TCONS_00058949 mRNA upstream 537514 29159911 ~ 29177272 (+) False XLOC_030147
TCONS_00058950 mRNA upstream 537640 29160132 ~ 29177146 (+) False XLOC_030147
TCONS_00058960 mRNA downstream 48492 29794058 ~ 29803293 (+) False XLOC_030154
TCONS_00058962 mRNA downstream 57814 29803380 ~ 29817848 (+) False XLOC_030155
TCONS_00058964 mRNA downstream 57856 29803422 ~ 29812590 (+) False XLOC_030155
TCONS_00058965 mRNA downstream 57862 29803428 ~ 29812311 (+) False XLOC_030155
TCONS_00058966 mRNA downstream 57964 29803530 ~ 29811968 (+) False XLOC_030155
TCONS_00058952 other upstream 500140 29214530 ~ 29214646 (+) True XLOC_030148
TCONS_00058939 other upstream 888646 28824612 ~ 28826140 (+) True XLOC_030141
TCONS_00058938 other upstream 896173 28812453 ~ 28818613 (+) True XLOC_030140
TCONS_00058916 other upstream 1672267 28041984 ~ 28042519 (+) True XLOC_030128
TCONS_00058863 other upstream 3481718 26221016 ~ 26233068 (+) False XLOC_030104
TCONS_00058961 other downstream 48510 29794076 ~ 29799058 (+) True XLOC_030154
TCONS_00058963 other downstream 57845 29803411 ~ 29812612 (+) False XLOC_030155
TCONS_00058970 other downstream 85629 29831195 ~ 29847899 (+) False XLOC_030157
TCONS_00058972 other downstream 85839 29831405 ~ 29843117 (+) True XLOC_030157
TCONS_00058974 other downstream 244581 29990147 ~ 29990221 (+) True XLOC_030160

Expression Profile

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