RNA id: TU2626799



Basic Information


Item Value
RNA id TU2626799
length 446
lncRNA type intronic
GC content 0.48
exon number 2
gene id G2296304
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11594703 ~ 11595368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTACTGTAGTCTCCTTTCTACAGTAGTCTCCTTACTAAAGTAGTTTCAAGTCTGTTATTTTATACTTCTCCTCTCTTTCGTTTCCTGAAACACTATACAGTAGTGGGCATATGCAGCTGTAGGTGGGGGCTCTTTGGCTCAATCCAAACCATCTTGAATAACTTccttctctcttgtcctcctctccATGGGGGTTTATTGTACAGGACCTGACAGGGTAGGGCAGAATGGTGGGGCCATTACTCCTCCATACAGTAGTGGTTATTCTAAGGAGTAGGAGATGAAACGACAAGGACGCATAGGGACTCAGGAGGATGGATAGGGACTCAGGATGATGCATAGGGACTCAGGAGGACACGTTGGGACTTAGGAGGACGCATAGGGACTCAGGAGGATGCATAGGGACTCAGGAGGACACGTTGGGACTCAGGAGACGCATAGGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2626797 lncRNA upstream 384 11593523 ~ 11594319 (+) True G2296302
TU2626791 lncRNA upstream 6490 11586775 ~ 11588213 (+) False G2296297
TU2626792 lncRNA upstream 6626 11586775 ~ 11588077 (+) True G2296297
TU2626766 lncRNA upstream 46083 11545314 ~ 11548620 (+) False G2296282
TU2626767 lncRNA upstream 47480 11545314 ~ 11547223 (+) True G2296282
TU2626817 lncRNA downstream 38580 11633948 ~ 11634420 (+) True G2296321
TU2626831 lncRNA downstream 148217 11743585 ~ 11747039 (+) True G2296334
TU2626833 lncRNA downstream 164308 11759676 ~ 11761155 (+) False G2296335
TU2626834 lncRNA downstream 164308 11759676 ~ 11761155 (+) True G2296335
TU2626874 lncRNA downstream 167543 11762911 ~ 11763220 (+) True G2296374
XR_005041365.1 mRNA upstream 329837 11263532 ~ 11264866 (+) False LOC118946500
XM_021559855.2 mRNA upstream 360235 11193050 ~ 11234468 (+) True LOC110487935
NM_001124657.1 mRNA upstream 590267 11002048 ~ 11004436 (+) True il6
XM_036971572.1 mRNA upstream 785304 10759053 ~ 10809399 (+) True LOC110489377
XM_036971573.1 mRNA upstream 799613 10759051 ~ 10795090 (+) False LOC110489377
XM_021559844.2 mRNA downstream 68632 11664000 ~ 11742813 (+) True LOC110487927
XM_036971057.1 mRNA downstream 219739 11815107 ~ 11841142 (+) False LOC110487931
XM_021559848.2 mRNA downstream 310837 11906205 ~ 11909631 (+) False LOC110487932
XM_021559850.2 mRNA downstream 336190 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA downstream 336199 11931567 ~ 11959079 (+) False LOC110487934
TU2626760 other upstream 30113 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 304400 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1073396 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1271115 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1463052 10130116 ~ 10131651 (+) False G2294925
TU2626940 other downstream 311339 11906707 ~ 11908666 (+) False LOC110487932
TU2626989 other downstream 319828 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 2034694 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 2157899 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 2418864 14014232 ~ 14015587 (+) True G2298884

Expression Profile