RNA id: TU2626939


Basic Information

Item Value
RNA id TU2626939
length 354
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G2296410
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11883484 ~ 11911337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggactatgtcagtggtacagatggaactatccaagcagaagataaatCCCCTTCAAATGTTGGTTTTTGGTTGCGTTACCAACCAAACGCAATTCAATATAACTGTTGAAATACAGTAAATATCCTGataacttgtcgacaagttaacaAATGATAGGTTGGgttcacgtctccaactcaaccaaaaatcaaagttaaagaatgggattaagtcagtggctcagatggaactatgcaagcagtagatacatctcctttaaatgttgatatttgtctCTCTTATTAGAGGAATCACAGTGCTAACAGATTAATCagttgtataaataaacaaaacacctGACATTTTATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626936 lncRNA upstream 42386 11839811 ~ 11841098 (+) True LOC110487931
TU2626942 lncRNA upstream 43807 11838834 ~ 11839677 (+) False LOC110487931
TU2626941 lncRNA upstream 43952 11838834 ~ 11839532 (+) False LOC110487931
TU2626894 lncRNA upstream 115875 11765257 ~ 11767609 (+) False G2296376
TU2626990 lncRNA downstream 3859 11915196 ~ 11977297 (+) False G2296450
TU2626991 lncRNA downstream 3859 11915196 ~ 11977297 (+) False G2296450
TU2626992 lncRNA downstream 3859 11915196 ~ 11918140 (+) True G2296450
TU2627025 lncRNA downstream 73035 11984372 ~ 11987635 (+) True G2296481
TU2627541 lncRNA downstream 99611 12010948 ~ 12011147 (+) True G2296869
XM_036971057.1 mRNA upstream 42342 11815107 ~ 11841142 (+) False LOC110487931
XM_021559844.2 mRNA upstream 140671 11664000 ~ 11742813 (+) True LOC110487927
XM_036971459.1 mRNA upstream 226960 11553349 ~ 11656524 (+) False LOC110487925
XM_036971460.1 mRNA upstream 226960 11553349 ~ 11656524 (+) False LOC110487925
XM_036971462.1 mRNA upstream 226960 11553349 ~ 11656524 (+) True LOC110487925
XM_021559850.2 mRNA downstream 20221 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA downstream 20230 11931567 ~ 11959079 (+) False LOC110487934
XM_021559852.2 mRNA downstream 20235 11931572 ~ 11959079 (+) False LOC110487934
XM_021559853.2 mRNA downstream 20235 11931572 ~ 11959079 (+) True LOC110487934
XM_036970833.1 mRNA downstream 71954 11983291 ~ 12112461 (+) False LOC110489380
TU2626760 other upstream 318894 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 593181 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1362177 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1559896 10318852 ~ 10323588 (+) True LOC118946540
TU2624966 other upstream 1751833 10130116 ~ 10131651 (+) False G2294925
TU2626989 other downstream 3859 11915196 ~ 11918140 (+) False G2296450
TU2629183 other downstream 1718725 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1841930 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 2102895 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 2295829 14207166 ~ 14223877 (+) False LOC118936620

Expression Profile