RNA id: TU2626989


Basic Information

Item Value
RNA id TU2626989
length 2326
RNA type TUCP
GC content 0.47
exon number 4
gene id G2296450
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11915196 ~ 11977297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATTCACAGAACCCCAAACCTTTAATTACCACAGCTTGCTCACAAAGATATATGTGGAGGGGGGAAACAcacaaacaggaagagagagagacagccaggttCATCACCACAGACAGGAAGCTGTGAAGTCGCAGACAGGACCCTGTGATGTCCCAGACAGGACCCTGTGATGTCCCAGACAGGACGGTGTGATGTCACAGACAGGATGTTGCGATGTCTCAGACAGGACGCTGTGATGTCATTAGTATGTGACGGACGGTTGGATATACAGCTCCAACCTCCTGGCTGGTATAATAAGCTCTAAACCAGAGAAACAGCACAGGCGCACGCACATCCACCCACCCCTACTGAAacatacacactctctcacacacccttaCTGAAAcatgcactctctcacacacatccacccacccttactgaaacatacacactctctaacacacatccacccacccttacagaaacatacacactctctcacacacatccacccacccctactgaaacatacacactctctcacacacccttaCTGAAAcatgcactctctcacacacatccacccacccttactgaaacatacacactctctcacacacatccacccaccccTACTGAAACatgcacactctctcacacacatccacccacccctactgaaacatacacactctctcacacacatccacccacccctactgaaacatacacactctctcacacacatccacccactcctactgaaacatacacactctctcacatACATCCACCCACTCCTACTGAAacATACACCCTTTGTCTTCCATTGTCATGTCAGGATCTTCTAGATGTTATTATATGTCTGTGTTGGTTGTTTTCTTACGTCTTAATGTTGCCTACTTGTTCTCCTGTGCCATAGTTTGCCGTACACAGTTAAGAGACGACGGTACAATGACTCATTCTCAATAGTGAGAGAGTCAAACTATGATTCTCCATAGAGAGTGAAACCTCTGTAGTAGCATTTGGCTTGGTTCCTCTGTGGCACAACATGAAAGAGCTGAGAGGGCCCATTAGCCTGTTTAAGGACATGGATGTTACTTAGTGATCTACCATTGCTTAAGCGTTAACCGCTATATGAGCTTGTAGCATTCTAGGCACGATTACATTATCTACACGTCTAAGatggtacatacagtacatgctgaGAGAGTGATTGACAGATGACGCAGGGGGTCTTGGGAACGAGAAAGGACCATAACACCCCTCTGTGACATCACGGTATGAACCAAGGATGTCATGTGACTTCTGCGATGCCCAACTGACAGATTTTTTAGCAAGCTCCTCTTAAACAACATGTCGTGTTTGCCAAATTCCTCAGTCTGTGTATGCGTGTGCGCTTGCATGTGTGTGAATGAACTAATCTATGCAAGAGAGTgggagaacagacagacagacaggagagaatcGGCTCATAAAAGCTATAGTATTCTCCTGATGTCTAGCTAGTCTCTCTCCTGGAAGTCAATGAGCAGCCTGTATTATCATCATccccacactgactgactgactgactgactgactgactgactgacacagaaACAAACATGGTCAGAAAATAACCAGCGCAAACGCACGTCGGCTAGCTGGCGAACTCACAACAACACAGAAGCCTTATAGTACGAGAGAAACTGCAAACGATTTTTGtttgagaaaaaaataaaataaaagtacatCCATAGATAGAGAAAATGCTAAAATGGCACACTGCAATACTTCTGCTGTACTATCCTACTGTATATAACAAAAACATAAGTATTTACAAAAAACAATACCCACTATAACTTGGTTGGCTTTTCATCTTTTCTTTTTTCAGCATTTGAAATCGAGCAAAAACATTATTTattagggagggggggggtgacaTTTTGGTCGTTTTTTTTGCAATCCCCCCATTTGCTAATGCTGTTGGTGTGGGGTGCCGGTGGGTCCTCCACCTCACTCTGGGGGGGGTCTTCTGACGCTGGGGGTGCTGTAGAAGTGGGGTTGTCAGGGGAGTCCCTTGGGAGGGGGCGGAGGAGTACAGGGTACAGGAGGGTGGCTGTAGGGGGGGGGGTACGATGGTTTGTGGCGCCCCACGCCTGCTCACGCTGTCAGCTCTTCCCTCAGCTCTTTGTTCCTGCGCACCACCTGGGCATGCCTCTCCTTCTCCTCTGCCATCTTGCTGAAGTTGCTGTTCTCCTCCATGGCCTTCATCACCACGTCTCTCTCGTGCTCCCGCTTTTCTGCCAGGGCCCTGAGAACCTGGGCCTCCTGGGACTGAAGCGgtgatagaatagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2626939 lncRNA upstream 3859 11883484 ~ 11911337 (+) True G2296410
TU2626934 lncRNA upstream 4830 11908929 ~ 11910366 (+) False LOC110487932
TU2626935 lncRNA upstream 4830 11908929 ~ 11910366 (+) True LOC110487932
TU2626975 lncRNA upstream 20337 11891931 ~ 11894859 (+) True G2296443
TU2626936 lncRNA upstream 74098 11839811 ~ 11841098 (+) True LOC110487931
TU2627025 lncRNA downstream 66232 11984372 ~ 11987635 (+) True G2296481
TU2627541 lncRNA downstream 92808 12010948 ~ 12011147 (+) True G2296869
TU2627542 lncRNA downstream 95152 12013292 ~ 12013605 (+) True G2296870
TU2627550 lncRNA downstream 106185 12024325 ~ 12024575 (+) True G2296875
TU2627558 lncRNA downstream 119144 12037284 ~ 12037485 (+) True G2296883
XM_021559848.2 mRNA upstream 5565 11906205 ~ 11909631 (+) False LOC110487932
XM_036971057.1 mRNA upstream 74054 11815107 ~ 11841142 (+) False LOC110487931
XM_021559844.2 mRNA upstream 172383 11664000 ~ 11742813 (+) True LOC110487927
XM_036971459.1 mRNA upstream 258672 11553349 ~ 11656524 (+) False LOC110487925
XM_021559850.2 mRNA downstream 13418 11931558 ~ 11959079 (+) False LOC110487934
XM_021559851.2 mRNA downstream 13427 11931567 ~ 11959079 (+) False LOC110487934
XM_021559852.2 mRNA downstream 13432 11931572 ~ 11959079 (+) False LOC110487934
XM_021559853.2 mRNA downstream 13432 11931572 ~ 11959079 (+) True LOC110487934
XM_036970833.1 mRNA downstream 65151 11983291 ~ 12112461 (+) False LOC110489380
TU2626940 other upstream 6530 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 350606 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 624893 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1393889 10514954 ~ 10521307 (+) True LOC110487904
TU2625098 other upstream 1591608 10318852 ~ 10323588 (+) True LOC118946540
TU2629183 other downstream 1711922 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1835127 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 2096092 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 2289026 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 2300761 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile