RNA id: TCONS_00058960


Basic Information

Item Value
RNA id TCONS_00058960
length 835
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_030154
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29794058 ~ 29803293 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTCTGCCTTCCTGAAGGGATCACTACTGAGGGTATTGTGTCTATAACGCAACATCTCTAGCATTCTTGAGCAAAGAAGGATAAGGTTTTGCTGTGCACCGTGATCAGGATGTTCTACACCGCCTTTGCCACTCTCTTTTTACTTGgtgttgtTACTGCCCAGACATCCCTTAGGATTACATCCTGCTTGACTAAAGACCAAAACCTTCAAATGTCCTGCACCTTCACTCCAGCTCCAGACACCAAGCTCTCAAAAACATGCTACTACATGACTGACAATAAATTGATTGGCAGTACCAACAGCAGCAGCACACCAGACAGCACGTTCAGGAACCGTGCCAATGTCACCATTACTGATAACAAGTGTGACCTGTATTTGAAGGGTTTACCAGATAGCAAACCTGCAAACTACACTTGCTTTATCAGACAGACTGCCGCACCGGTGTCAATCATTCAAACTGTGGACAAGAGTAAGCTTCAGACCTGTTCAGCGTGGAGTGTTTTGCAACACAGTGGAGTAGCGTTCCTGTTGGCCTTCCTCACTTTCCCACTGTTGTCAGAGCTTCTGTGAGCATGAATTGGATCTCCTGAAATAACTCTACTCCCACAAAACTTATTCTCAATCCTCTATCTTGCAGAAGTTTCATATAATTCTGAAATCCAAAGTCTTCTGACtgttttaatttgtgtgtgtacacTGGTTCAGGTTGTGCTGATGTCAAACACTGTTATATCATGCATGTCCTTTTTAAATAACATGTGCTGTTGTAAATGTGAACCAAATGCTTGGCATTGTTTTAATTattctgaaataaaatattattgtactcCCTA

Function

GO:

id name namespace
GO:0030334 regulation of cell migration biological_process
GO:0007155 cell adhesion biological_process
GO:0005178 integrin binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko00670 One carbon pool by folate
ko04670 Leukocyte transendothelial migration
ko04147 Exosome
ko04090 CD molecules
ko00537 Glycosylphosphatidylinositol (GPI)-anchored proteins

ZFIN:

id description
ZDB-GENE-030131-8561 Predicted to enable integrin binding activity. Predicted to act upstream of or within cell adhesion and regulation of cell migration. Is expressed in eye. Orthologous to human THY1 (Thy-1 cell surface antigen).

Ensembl:

ensembl_id ENSDART00000045410

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058959 lncRNA upstream 1434 29784172 ~ 29792624 (+) True XLOC_030153
TCONS_00061714 lncRNA upstream 228233 29560655 ~ 29565825 (+) False XLOC_030150
TCONS_00061715 lncRNA upstream 228233 29562648 ~ 29565825 (+) True XLOC_030150
TCONS_00061713 lncRNA upstream 231561 29560059 ~ 29562497 (+) False XLOC_030150
TCONS_00061712 lncRNA upstream 550898 29241794 ~ 29243160 (+) True XLOC_030149
TCONS_00061717 lncRNA downstream 98860 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061716 lncRNA downstream 98860 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061719 lncRNA downstream 98860 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA downstream 98860 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061438 lncRNA downstream 98868 29902161 ~ 29902869 (+) False XLOC_030159
TCONS_00058956 mRNA upstream 48492 29714786 ~ 29745566 (+) False XLOC_030152
TCONS_00058957 mRNA upstream 48798 29715040 ~ 29745260 (+) False XLOC_030152
TCONS_00058958 mRNA upstream 62177 29726428 ~ 29731881 (+) True XLOC_030152
TCONS_00058955 mRNA upstream 82110 29671681 ~ 29711948 (+) True XLOC_030151
TCONS_00058953 mRNA upstream 121914 29652198 ~ 29672144 (+) False XLOC_030151
TCONS_00058962 mRNA downstream 87 29803380 ~ 29817848 (+) False XLOC_030155
TCONS_00058964 mRNA downstream 129 29803422 ~ 29812590 (+) False XLOC_030155
TCONS_00058965 mRNA downstream 135 29803428 ~ 29812311 (+) False XLOC_030155
TCONS_00058966 mRNA downstream 237 29803530 ~ 29811968 (+) False XLOC_030155
TCONS_00058967 mRNA downstream 409 29803702 ~ 29812311 (+) True XLOC_030155
TCONS_00058952 other upstream 579412 29214530 ~ 29214646 (+) True XLOC_030148
TCONS_00058939 other upstream 967918 28824612 ~ 28826140 (+) True XLOC_030141
TCONS_00058938 other upstream 975445 28812453 ~ 28818613 (+) True XLOC_030140
TCONS_00058916 other upstream 1751539 28041984 ~ 28042519 (+) True XLOC_030128
TCONS_00058863 other upstream 3560990 26221016 ~ 26233068 (+) False XLOC_030104
TCONS_00058963 other downstream 118 29803411 ~ 29812612 (+) False XLOC_030155
TCONS_00058970 other downstream 27902 29831195 ~ 29847899 (+) False XLOC_030157
TCONS_00058972 other downstream 28112 29831405 ~ 29843117 (+) True XLOC_030157
TCONS_00058974 other downstream 186854 29990147 ~ 29990221 (+) True XLOC_030160
TCONS_00058975 other downstream 187159 29990452 ~ 29990544 (+) True XLOC_030161

Expression Profile

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