RNA id: TU2627599


Basic Information

Item Value
RNA id TU2627599
length 994
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G2296920
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12119372 ~ 12120455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtcacacagtTAGCAGATGTTGTAGAgccaacagtgcagcagtatctaacaggtaatatctaacaattcctcaacaaaacctaataaatgaatgagaatatataagtacaaaatatggatgagcagtgacagagcagtTAAAATGCAATAGATTGtaaagaatacagtatatacatatgagatgagtagtgtGAAATGTGGCATTAAAGTGACTCGTGTTCCACTTAGTGGCCAGTGATaccaagtctgtaggtaggcagccacctctgtgctagtgatggctgttcaacaaTGACAGCCTTGAGATAATTGTTTGTACCTCACCTTCAGGATacaagcggggtgaacaggtagtagctcgggtggttattgtccttcatgatcttttttgccttcctgtgacatcgggtgttgtatgtgtcctggagggcaggtagtttgcccccagtgattaAGTGTTTATGTCATAGGACAGTCCTGAAGCATATGTACAGTGTGCATTAAAACTGCACTATAACAAAATCCTAAGTGTAATTGACCACCAACAAATACCATTTAAAAAGTCAACAGCAAAGTAAAATAAAAACTAGGAGGCGCCTCTTTTCATAGCCGCGTTGTAAAAAGGGTATGGTTAAAGTAAAAATCTTGCGCAAGTACCTCAGATGTTACGCAAAGAAAATATATAAACGAACTAAAGGCATCAATGCCAGAATGTTACTTGAGAAGCACAGGCGTCGCCTGAAGGATTTCACCAGTACATTCAGTCAATCATCCTCCCCTGAGGGTTAATTTTCCTTTTGTTCTGTGACCTCATCATCTTCTGTGACATCCTCatcctcatcatcatcttctGTGACATCAGACCTGGGTGTGAAAACACTGTTGGTACTGGGGGCATCAGGTTCTTCTAGTCCCTCAAAATTGTCATCAGCACCAAGCGCAATCTCTCGCAGGTCCTCTAGACTTTCCGGACTCTTTCCAGTTAACCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627558 lncRNA upstream 81887 12037284 ~ 12037485 (+) True G2296883
TU2627550 lncRNA upstream 94797 12024325 ~ 12024575 (+) True G2296875
TU2627542 lncRNA upstream 105767 12013292 ~ 12013605 (+) True G2296870
TU2627541 lncRNA upstream 108225 12010948 ~ 12011147 (+) True G2296869
TU2627025 lncRNA upstream 131737 11984372 ~ 11987635 (+) True G2296481
TU2627623 lncRNA downstream 55051 12175506 ~ 12176079 (+) True G2296941
TU2627753 lncRNA downstream 114050 12234505 ~ 12235139 (+) True G2297039
TU2627760 lncRNA downstream 118813 12239268 ~ 12301910 (+) True G2297045
TU2627789 lncRNA downstream 201055 12321510 ~ 12322066 (+) True G2297072
TU2627801 lncRNA downstream 222581 12343036 ~ 12344731 (+) True G2297082
XM_036970833.1 mRNA upstream 6911 11983291 ~ 12112461 (+) False LOC110489380
XM_036970835.1 mRNA upstream 6911 11983291 ~ 12112461 (+) False LOC110489380
XM_036970832.1 mRNA upstream 6911 11983292 ~ 12112461 (+) False LOC110489380
XM_036970834.1 mRNA upstream 6911 11983292 ~ 12112461 (+) False LOC110489380
XM_036970837.1 mRNA upstream 6911 11983293 ~ 12112461 (+) False LOC110489380
XM_021559842.2 mRNA downstream 26223 12146678 ~ 12153737 (+) True LOC110487924
XM_021559856.2 mRNA downstream 202416 12322871 ~ 12414149 (+) False col8a2
XR_005041309.1 mRNA downstream 202416 12322871 ~ 12414149 (+) True col8a2
XM_036971819.1 mRNA downstream 304588 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA downstream 304588 12425043 ~ 12472248 (+) False LOC110487937
TU2626989 other upstream 201232 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 210706 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 554782 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 829069 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1598065 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1509607 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1632812 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1893777 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 2086711 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 2098446 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile