RNA id: TU2627753


Basic Information

Item Value
RNA id TU2627753
length 257
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G2297039
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12234505 ~ 12235139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacagggtactactactactgtatacagggtactactacagggtactactactacagtatacagggtactactactacagggtactactactacagggtactactactactgtatacagggtactacttcagggtactactactacagggtactactactacagtatacagggtactactactacagggtactactactacagggtactactactactgtatacagggtactactacaaggtactactactacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627623 lncRNA upstream 58426 12175506 ~ 12176079 (+) True G2296941
TU2627599 lncRNA upstream 114050 12119372 ~ 12120455 (+) False G2296920
TU2627600 lncRNA upstream 114050 12119372 ~ 12120455 (+) True G2296920
TU2627558 lncRNA upstream 197020 12037284 ~ 12037485 (+) True G2296883
TU2627550 lncRNA upstream 209930 12024325 ~ 12024575 (+) True G2296875
TU2627760 lncRNA downstream 4129 12239268 ~ 12301910 (+) True G2297045
TU2627789 lncRNA downstream 86371 12321510 ~ 12322066 (+) True G2297072
TU2627801 lncRNA downstream 107897 12343036 ~ 12344731 (+) True G2297082
TU2627822 lncRNA downstream 140036 12375175 ~ 12375740 (+) True G2297098
TU2627819 lncRNA downstream 182803 12417942 ~ 12418209 (+) True G2297096
XM_021559842.2 mRNA upstream 80768 12146678 ~ 12153737 (+) True LOC110487924
XM_036970834.1 mRNA upstream 122044 11983292 ~ 12112461 (+) False LOC110489380
XM_021559856.2 mRNA downstream 87732 12322871 ~ 12414149 (+) False col8a2
XR_005041309.1 mRNA downstream 87732 12322871 ~ 12414149 (+) True col8a2
XM_036971819.1 mRNA downstream 189904 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA downstream 189904 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA downstream 218523 12453662 ~ 12472248 (+) True LOC110487937
TU2626989 other upstream 316365 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 325839 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 669915 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 944202 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1713198 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1394923 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1518128 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1779093 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1972027 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1983762 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile