RNA id: TU2627851


Basic Information

Item Value
RNA id TU2627851
length 297
lncRNA type intronic
GC content 0.41
exon number 2
gene id G2297127
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12464038 ~ 12465088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaattattttataaaaactTACTCCTATGCCATGCCTttccatgtctggaatacactgccatcagacacacacaactgcaccacctatcacactttcacaaaaacaTGAAGACAAGGCTAAAGGTCAGATTTttttgtgaacataatccctagctgctttccatgttgtctgttgtctgtagcttgtgaggtgtgggaacactttgttgcttttatgggGTTTATCTTTTTGTGCTatgtttctctgtctgcattctcTGTcccatgtttctctgtctgcattctcTGTcccatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627819 lncRNA upstream 45829 12417942 ~ 12418209 (+) True G2297096
TU2627822 lncRNA upstream 88298 12375175 ~ 12375740 (+) True G2297098
TU2627801 lncRNA upstream 119307 12343036 ~ 12344731 (+) True G2297082
TU2627789 lncRNA upstream 141972 12321510 ~ 12322066 (+) True G2297072
TU2627760 lncRNA upstream 162128 12239268 ~ 12301910 (+) True G2297045
TU2627858 lncRNA downstream 13896 12478984 ~ 12482894 (+) True G2297133
TU2627871 lncRNA downstream 30932 12496020 ~ 12498578 (+) True G2297146
TU2627891 lncRNA downstream 65402 12530490 ~ 12569590 (+) True G2297165
TU2627903 lncRNA downstream 87602 12552690 ~ 12556516 (+) False G2297177
TU2627904 lncRNA downstream 87602 12552690 ~ 12556516 (+) False G2297177
XM_021559856.2 mRNA upstream 49889 12322871 ~ 12414149 (+) False col8a2
XR_005041309.1 mRNA upstream 49889 12322871 ~ 12414149 (+) True col8a2
XM_021559842.2 mRNA upstream 310301 12146678 ~ 12153737 (+) True LOC110487924
XM_036970838.1 mRNA upstream 351577 11983293 ~ 12112461 (+) False LOC110489380
XM_036970609.1 mRNA downstream 809132 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 1042500 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 1385887 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 1385887 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 1385887 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 545898 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 555372 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 899448 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1173735 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1942731 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1164974 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1288179 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1549144 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1742078 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1753813 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile