RNA id: TU2627871


Basic Information

Item Value
RNA id TU2627871
length 303
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G2297146
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12496020 ~ 12498578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcagggcgtgagttgggttgggcagtctatgtttgtttttctatgatttgggtatttctatgtttccgcccagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctctgtgttttgcaccagatagggctgttttgggttttcacgtttcttgtttttgttagtttgttcatgtgaagtgatttattaaaacatgagtcaaaataaccacgctgcgctttggtccgcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627858 lncRNA upstream 13126 12478984 ~ 12482894 (+) True G2297133
TU2627851 lncRNA upstream 30932 12464038 ~ 12465088 (+) True G2297127
TU2627819 lncRNA upstream 77811 12417942 ~ 12418209 (+) True G2297096
TU2627822 lncRNA upstream 120280 12375175 ~ 12375740 (+) True G2297098
TU2627801 lncRNA upstream 151289 12343036 ~ 12344731 (+) True G2297082
TU2627891 lncRNA downstream 31912 12530490 ~ 12569590 (+) True G2297165
TU2627903 lncRNA downstream 54112 12552690 ~ 12556516 (+) False G2297177
TU2627904 lncRNA downstream 54112 12552690 ~ 12556516 (+) False G2297177
TU2627907 lncRNA downstream 57422 12556000 ~ 12556516 (+) True G2297177
TU2627919 lncRNA downstream 65580 12564158 ~ 12580049 (+) True G2297185
XM_036971819.1 mRNA upstream 23772 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 23772 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 23772 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 81871 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 775642 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 1009010 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 1352397 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 1352397 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 1352397 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 577880 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 587354 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 931430 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1205717 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 1974713 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1131484 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1254689 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1515654 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1708588 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1720323 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile